Source: i2masschroq Section: science Priority: optional Maintainer: The Debichem Group Uploaders: Filippo Rusconi Build-Depends: debhelper-compat (= 12), dpkg-dev (>= 1.18.25), cmake (>= 3.12), qtbase5-dev, libpappsomspp-dev (>= 0.8.49), libpappsomspp-widget-dev (>= 0.8.49), libodsstream-dev, libqt5svg5-dev, libqcustomplot-dev, libgrantlee5-dev, librdata-dev (>= 0~20210223+git-85757dc6), docbook-to-man, libjs-jquery, libjs-highlight.js, daps, fonts-ebgaramond, fonts-ebgaramond-extra, doxygen, catch2, graphviz Standards-Version: 4.6.0 Homepage: http://pappso.inra.fr/bioinfo Package: xtpcpp Section: oldlibs Architecture: any Multi-Arch: no Depends: i2masschroq, debconf, po-debconf, ${shlibs:Depends}, ${misc:Depends} Description: Transitional package from xtpcpp to i2masschroq The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package is a transitional package. You can remove it at any time. Package: xtpcpp-doc Section: oldlibs Architecture: all Multi-Arch: no Depends: i2masschroq-doc, debconf, po-debconf, ${misc:Depends} Description: Transitional package from xtpcpp-doc to i2masschroq-doc The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package is a transitional package. You can remove it at any time. Package: xtpcpp-tools Section: oldlibs Architecture: any Multi-Arch: no Depends: i2masschroq-tools, debconf, po-debconf, ${shlibs:Depends}, ${misc:Depends}, Description: Transitional package from xtpcpp-tools to i2masschroq-tools The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package is a transitional package. You can remove it at any time. Package: i2masschroq Architecture: any Multi-Arch: no Depends: tandem-mass, ${shlibs:Depends}, ${misc:Depends} Recommends: i2masschroq-tools Provides: xtpcpp (= 0.4.54) Replaces: xtpcpp (<< 0.4.54) Breaks: xtpcpp (<< 0.4.54) Description: Successor of X!TandemPipeline The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export Package: i2masschroq-doc Section: doc Architecture: all Depends: libjs-jquery, libjs-highlight.js, ${misc:Depends} Provides: xtpcpp-doc (= 0.4.54) Replaces: xtpcpp-doc (<< 0.4.54) Breaks: xtpcpp-doc (<< 0.4.54) Description: Successor of X!TandemPipeline (user manual) The program allows one to perform the following tasks: -Reads X!Tandem xml results files -Reads MASCOT dat results files -Reads TPP pepXML results files -Reads PSI mzIdentML results files -Run X!Tandem analyzes through a graphical user interface -Implements various filters based on statistical values -Powerful original grouping algorithm to filter redundancy -Phosphopeptide mode to handle phosphoproteomics datasets -Edit, search and sort the data graphically -XIC chromatogram browser (eXtracted Ion Current) -Comparisons of theoretical isotope patterns to measured MS1 XIC areas -Export data directly to Microsoft Office 2010 and LibreOffice (ods export) -Handle huge datasets very quickly -Perform peptide quantification through MassChroQml export . This package ships the user manual in both PDF and HTML formats. Package: i2masschroq-tools Architecture: any Multi-Arch: no Depends: tandem-mass, ${shlibs:Depends}, ${misc:Depends} Provides: xtpcpp-tools (= 0.4.54) Replaces: xtpcpp-tools (<< 0.4.54), xtpcpp-tandemwrapper-dbgsym (<< 0.4.54), xtpcpp-tandemwrapper (<< 0.4.54) Breaks: xtpcpp-tools (<< 0.4.54), xtpcpp-tandemwrapper-dbgsym (<< 0.4.54), xtpcpp-tandemwrapper (<< 0.4.54) Description: X!Tandem-related utilities for timsTOF pro and modern mzML data The programs allow one to perform the following tasks: . - Convert and store a (partial) copy of the initial mass spectrometry data files in the mzXML format that is required by X!Tandem; - Perform the conversion above and run i2masschroq on the obtained data files seamlessly. . This package ships two command line tools that are useful when mass data are available in a format that is not immediately consumable by X!Tandem (like mzML or Bruker timsTOF data).