#!/usr/bin/make -f

include /usr/share/dpkg/default.mk

export LC_ALL=C.UTF-8

DEBIAN_JARS=/usr/share/java/apache-mime4j-core.jar \
            /usr/share/java/axis.jar \
            /usr/share/java/axis-jaxrpc.jar \
            /usr/share/java/biojava6-ontology.jar \
            /usr/share/java/commons-discovery.jar \
            /usr/share/java/groovy-all.jar \
            /usr/share/java/htsjdk.jar \
            /usr/share/java/httpclient.jar \
            /usr/share/java/httpcore.jar \
            /usr/share/java/httpmime.jar \
            /usr/share/java/intervalstorej.jar \
            /usr/share/java/jaxb-api.jar \
            /usr/share/java/jaxrs-api.jar \
            /usr/share/java/jersey1-client.jar \
            /usr/share/java/jersey1-core.jar \
            /usr/share/java/jetty9-util.jar \
            /usr/share/java/jetty9-server.jar \
            /usr/share/java/jh.jar \
            /usr/share/java/Jmol.jar \
            /usr/share/java/jsearch-indexer.jar \
            /usr/share/java/json.jar \
            /usr/share/java/json-simple.jar \
            /usr/share/java/jsoup.jar \
            /usr/share/java/jswingreader.jar \
            /usr/share/java/log4j-1.2.jar \
            /usr/share/java/log4j-api.jar \
            /usr/share/java/log4j-core.jar \
            /usr/share/java/miglayout.jar \
            /usr/share/java/min-jaba-client.jar \
            /usr/share/java/org.jfree.svg.jar \
            /usr/share/java/slf4j-api.jar \
            /usr/share/java/vamsas-client.jar \
            /usr/share/java/varna.jar

DEBIAN_JARS_TEST=/usr/share/java/jaxb-impl.jar \
                 /usr/share/java/jcommander.jar \
                 /usr/share/java/junit4.jar \
                 /usr/share/java/mockito-core.jar \
                 /usr/share/java/testng.jar

%:
	dh $@ --with javahelper --with maven_repo_helper

override_dh_auto_clean:
	# Removing our handmade pom.
	$(RM) pom.xml
	# Removing the jars we gathered for the build and the tests.
	$(RM) -rf cpJars
	dh_auto_clean

override_dh_auto_configure:
	# Placing pom.xml at root, with a hack to put the package version number
	# inside the pom.
	sed 's/\(VERSION_PACKAGE\)/\1$(DEB_VERSION_UPSTREAM)/; s/VERSION_PACKAGE\(.*\)+dfsg[0-9]*/\1/' debian/pom.xml > pom.xml
	# Putting the jars needed for the build in cpJars to avoid exposing the whole
	# /usr/share/java contents in the build classpath.
	mkdir cpJars
	for F in $(DEBIAN_JARS); do \
	        cp $$F cpJars; \
	done
	dh_auto_configure

override_dh_installexamples:
	dh_installexamples
	# Providing an example at startup instead of having to load it from the Internet.
	cp examples/exampleFile_2_7.jar debian/$(DEB_SOURCE)/usr/share/doc/jalview/examples/exampleFile_2_7.jvp

override_dh_fixperms:
	# Setting the packaged example file as not executable.
	chmod a-x debian/$(DEB_SOURCE)/usr/share/doc/jalview/examples/uniref50.fa
	dh_fixperms

override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
	# Putting the additional jars needed for the tests in cpJars.
	for F in $(DEBIAN_JARS_TEST); do \
	        cp $$F cpJars; \
	done
	dh_auto_test
endif