Source: jmodeltest Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: science Priority: optional Build-Depends: debhelper-compat (= 13), javahelper, default-jdk, ant, alter-sequence-alignment, libfreemarker-java, libjcommon-java, libjfreechart-java, libmpj-java, libpal-java, prottest, texlive-latex-base, texlive-fonts-recommended, texlive-latex-recommended, texlive-latex-extra Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/jmodeltest Vcs-Git: https://salsa.debian.org/med-team/jmodeltest.git Homepage: https://github.com//ddarriba/jmodeltest2 Rules-Requires-Root: no Package: jmodeltest Architecture: all Depends: ${misc:Depends}, ${java:Depends}, java-wrappers, phyml Description: HPC selection of models of nucleotide substitution jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution. It implements five different model selection strategies: hierarchical and dynamical likelihood ratio tests (hLRT and dLRT), Akaike and Bayesian information criteria (AIC and BIC), and a decision theory method (DT). It also provides estimates of model selection uncertainty, parameter importances and model-averaged parameter estimates, including model-averaged tree topologies. jModelTest 2 includes High Performance Computing (HPC) capabilities and additional features like new strategies for tree optimization, model- averaged phylogenetic trees (both topology and branch length), heuristic filtering and automatic logging of user activity.