Source: sga Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Section: science Priority: optional Build-Depends: debhelper-compat (= 13), dh-python, libsparsehash-dev, zlib1g-dev | libz-dev, libbamtools-dev, help2man, # Run-Time Depends # (to prevent building on architectures where it won't be installable) samtools , python3 , python3-ruffus , python3-pysam Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/sga Vcs-Git: https://salsa.debian.org/med-team/sga.git Homepage: https://github.com/jts/sga Rules-Requires-Root: no Package: sga Architecture: any Depends: ${shlibs:Depends}, ${python3:Depends}, ${misc:Depends}, ${perl:Depends}, samtools, python3-ruffus, python3-pysam Recommends: abyss Description: de novo genome assembler that uses string graphs The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. . SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.