Source: snakemake
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Kevin Murray <kdmfoss@gmail.com>, Rebecca N. Palmer <rebecca_palmer@zoho.com>
Section: science
Priority: optional
Build-Depends: ca-certificates,
               cwltool,
               debhelper-compat (= 13),
               dh-python,
               pybuild-plugin-pyproject,
               environment-modules,
               imagemagick,
               python3,
               python3-platformdirs <!nocheck>,
               python3-biopython <!nocheck>,
               python3-boto3 <!nocheck>,
               python3-botocore <!nocheck>,
               python3-configargparse,
               python3-connection-pool,
               python3-datrie,
               python3-docutils,
               python3-dropbox <!nocheck>,
               python3-flask <!nocheck>,
               python3-git,
               python3-jinja2 (>= 3.0~),
               python3-jsonschema,
               python3-nbformat,
               python3-packaging,
               python3-pandas <!nocheck>,
               python3-pkg-resources,
               python3-psutil,
               python3-pulp (>= 2.0~),
               python3-pygments <!nocheck>,
               python3-pytest <!nocheck>,
               python3-pytools <!nocheck>,
               python3-ratelimiter,
               python3-recommonmark <!nodoc>,
               python3-requests,
               python3-requests-mock <!nocheck>,
               python3-retry,
               python3-pytest-mock <!nocheck>,
               python3-rpy2 <!nocheck>,
               python3-setuptools,
               python3-smart-open (>= 3.0~),
               python3-sphinx (>= 3.0~) <!nodoc>,
               python3-sphinx-argparse <!nodoc>,
               python3-sphinx-bootstrap-theme <!nodoc>,
               python3-sphinx-rtd-theme <!nodoc>,
               python3-stopit,
               python3-tabulate,
               python3-throttler <!nocheck>,
               python3-toposort <!nocheck>,
               python3-wrapt,
               python3-yaml,
               python3-yte <!nocheck>,
               r-cran-rmarkdown,
               stress <!nocheck>
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/snakemake
Vcs-Git: https://salsa.debian.org/med-team/snakemake.git
Homepage: https://snakemake.readthedocs.io/
Rules-Requires-Root: no

Package: snakemake
Architecture: all
Depends: ${misc:Depends},
         ${python3:Depends},
         ca-certificates,
         python3-platformdirs,
         python3-configargparse,
         python3-datrie,
         python3-docutils,
         python3-git,
         python3-jsonschema,
         python3-nbformat,
         python3-pkg-resources,
         python3-psutil,
         python3-pulp (>= 2.0~),
         python3-ratelimiter,
         python3-requests,
         python3-toposort,
         python3-wrapt,
         python3-yaml,
         python3-yte,
         libjs-bootstrap,
         libjs-jquery,
Recommends: cwltool,
            imagemagick,
            python3-tz,
            python3-yappi,
# for the templating and reports features
            python3-jinja2 (>= 3.0~),
            python3-pygments,
# for distributed / cloud setups or online data access
            python3-azure-storage,
            python3-biopython,
            python3-boto3,
            python3-botocore,
            python3-connection-pool,
            python3-dropbox,
            python3-flask,
            python3-ftputil,
            python3-irodsclient,
            python3-kubernetes,
            python3-packaging,
            python3-retry,
            python3-urllib3
Suggests: slurm-client,
          snakemake-doc
Description: pythonic workflow management system
 Build systems like GNU Make are frequently used to create complicated
 workflows, e.g. in bioinformatics. This project aims to reduce the
 complexity of creating workflows by providing a clean and modern domain
 specific language (DSL) in Python style, together with a fast and
 comfortable execution environment.


Package: snakemake-doc
Architecture: all
Depends: ${misc:Depends},
         ${sphinxdoc:Depends},
         libjs-mathjax,
Recommends: snakemake
Breaks: snakemake (<< 6.14)
Replaces: snakemake (<< 6.14)
Section: doc
Multi-Arch: foreign
Description: documentation for pythonic workflow management system
 Build systems like GNU Make are frequently used to create complicated
 workflows, e.g. in bioinformatics. This project aims to reduce the
 complexity of creating workflows by providing a clean and modern domain
 specific language (DSL) in Python style, together with a fast and
 comfortable execution environment.
 .
 This package provides the Sphinx-generated documentation and examples.