Source: snap-aligner Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Pranav Ballaney Section: science Priority: optional Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, libsimde-dev Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/snap-aligner Vcs-Git: https://salsa.debian.org/med-team/snap-aligner.git Homepage: http://snap.cs.berkeley.edu/ Rules-Requires-Root: no Package: snap-aligner Architecture: amd64 arm64 mips64el ppc64el s390x alpha kfreebsd-amd64 ppc64 riscv64 sparc64 Depends: ${shlibs:Depends}, ${misc:Depends} Description: Scalable Nucleotide Alignment Program SNAP is a new sequence aligner that is 3-20x faster and just as accurate as existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools. This gives SNAP up to 2x lower error rates than existing tools (in some cases) and lets it match larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing.