Source: t-coffee Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Section: science Priority: optional Build-Depends: debhelper (>= 12~) Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/t-coffee Vcs-Git: https://salsa.debian.org/med-team/t-coffee.git Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html Package: t-coffee Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Recommends: amap-align, clustalo, clustalw, dialign-tx, fsa, kalign, libsoap-lite-perl, libxml-simple-perl, mafft, muscle, mustang, ncbi-blast+, poa, prank, probcons, proda, tm-align Suggests: boxshade, seaview, t-coffee-examples Description: Multiple Sequence Alignment T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures. . T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information . T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer. Package: t-coffee-examples Architecture: all Depends: ${misc:Depends} Recommends: t-coffee Description: annotated examples for the use of T-Coffee To help increasing the proficiency in the use of T-Coffee, this package provides examples for input sequences and their proper alignment.