-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 28 Apr 2020 09:07:17 +0200 Source: trinityrnaseq Architecture: source Version: 2.10.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com> Changes: trinityrnaseq (2.10.0+dfsg-1) unstable; urgency=medium . * Eliminate warning about missing hardening flags * New upstream version * debhelper-compat 12 * debian/control: Added python3-htseq, rna-star, picard-tools, gmap, histat2, subread, kallisto, r-bioc-{edger,deseq2,rots,ctc,biobase,qvalue,goseq,tximport,dexseq,glimma}, r-cran-{ape,fastcluster,gplots,argparse,goplot,readr,tidyverse}, liburi-perl deps, and python3-hisat2 * Standards-Version: 4.5.0 (routine-update) * Refresh patches * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. * debian/rules: seqtk-trinity now has a unversioned path * debian/patches/butterfly: restore missing Butterfly sources * debian/patches/submake: use $(MAKE) consistently * Install the new bamsfilter plugin * Install trinity-plugins/COLLECTL/examine_resource_usage_profiling.pl * Install trinity-plugins/DEXseq_util/dexseq_prepare_annotation.py * Install PyLib/Pipeliner.py * Set PICARD_HOME default of /usr/share/java * Skip tests that require GATK4 until it gets packaged * Skip tests that require r-bioc-tximportdata * Skip the remaining tests waiting for new packages * debian/tests/runtests: s/ADTTMP/AUTOPKGTEST_TMP/g * Remove trailing whitespace in debian/changelog (routine-update) * debian/upstream/metadata: add Repository{,-Browse}, Bug-{Database,Submit} Checksums-Sha1: 9a85898476068b67bc5cd83f755a87d335721833 2618 trinityrnaseq_2.10.0+dfsg-1.dsc 0eb486c4e6dcff154e036bfe6d17896a3fbc900f 258595384 trinityrnaseq_2.10.0+dfsg.orig.tar.xz 6002e34d489aed0e232f9f1764b8814925c4c5bc 150832 trinityrnaseq_2.10.0+dfsg-1.debian.tar.xz a5eeabe2099e6587d5ae05bcfce0cccad645d5a7 17355 trinityrnaseq_2.10.0+dfsg-1_source.buildinfo Checksums-Sha256: 05ade864952ab7c1fde1e4f9b9d498d31e06a430023230ead1797f46316c87f7 2618 trinityrnaseq_2.10.0+dfsg-1.dsc 5f97adb42c95139b60eca8fd8ca08dbe04c3fc2b972ab41795425eb1b6d2a597 258595384 trinityrnaseq_2.10.0+dfsg.orig.tar.xz 3723950ed0c29ae3103ddb96f4404251ace45fd198f128cc80459c67c89edcf6 150832 trinityrnaseq_2.10.0+dfsg-1.debian.tar.xz 6099ea36697a068b4b06fc4b937c653248c96ebac95659daab32ec35557ab1ea 17355 trinityrnaseq_2.10.0+dfsg-1_source.buildinfo Files: b6517782ec8417cb77ec0907018a9dea 2618 science optional trinityrnaseq_2.10.0+dfsg-1.dsc 0957166cbff1a7e006804feb672b5dcb 258595384 science optional trinityrnaseq_2.10.0+dfsg.orig.tar.xz 2c006263b69546c75cc3b96655033d8f 150832 science optional trinityrnaseq_2.10.0+dfsg-1.debian.tar.xz cc0f3748adeb2a93c40de149fd1522a1 17355 science optional trinityrnaseq_2.10.0+dfsg-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl6n6TcACgkQPCZ2P2xn 5uKWdA/9HDfwTKp/NGPu5esHiNLZMNUiGNZNXT0zqk1Knev2pwEoMa0cH4Txf76l GNVcn2ytUrMUb/w8xsR9m6q9vRxunNCW5rVoSNGzODSo0a8Qe1ClcyQDv/FQvu22 e2DncSOTSTtD2+Xb8+LtYtoOA3W0+Fq0sgk+oZYcpHxs2HKMnBDNNFm8SpdIaQAh jCVP1Ve0jmaejmMElUHRCKWrhsSDTAwsk49LBrSQhsVLfQkganOgyiIOjGJWzyx4 FmmL9D/l2TgezOGypiYujjzseSAcNyqwvSUYdxAhbh4t3F1XyGnNaXrOPuEz5nME /RhiutgNWGADTj3CWrHTsU0cOEk08I2S06e74AAAxVkbkF4ZVEV8QD3OcIlvZkbl wCBnbgLdGfuYrNpE+ojKYn5ixuWcA4IPMFoiTHEMwvlX7+xA9BR6gWSh2g3ySDNL JJiCpcExyC++QcbrtOdgrt5g+6UZphlcI3Z4rPV+ogxMSZWnWzfJoZs5/FkgK7F1 2U0XTgyhH0BV3qRln3RGXjSxABRLV3ce4PpeEKP8laQqbU8Jm8DxTElPKS5lxvN0 8wKyqh7YKrS45e3WVUj1WgZdeUn+cKb61M0EYGuPbo7POGqGhoU+Wjqh2Npem/Ge Y6QUMO7sHSfow+FnswYQ8pJA9D2XiCBhWBULIitDpwTMfdG2c6s= =/OC0 -----END PGP SIGNATURE-----