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kalign
Global and progressive multiple sequence alignment
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general
source:
kalign
(
main
)
version:
1:3.5.1-1
maintainer:
Debian Med Packaging Team
(
archive
)
(
DMD
)
(
LowNMU
)
uploaders:
Andreas Tille
[
DMD
]
–
Charles Plessy
[
DMD
]
arch:
any
std-ver:
4.7.3
VCS:
Git
(
Browse
,
QA
)
versions
[more versions can be listed by madison]
[old versions available from snapshot.debian.org]
[pool directory]
o-o-stable:
1:3.3-1
oldstable:
1:3.3.5-1
stable:
1:3.4.0-1
testing:
1:3.4.0-1
unstable:
1:3.5.1-1
versioned links
1:3.3-1:
[.dsc, use dget on this link to retrieve source package]
[changelog]
[copyright]
[rules]
[control]
1:3.3.5-1:
[.dsc, use dget on this link to retrieve source package]
[changelog]
[copyright]
[rules]
[control]
1:3.4.0-1:
[.dsc, use dget on this link to retrieve source package]
[changelog]
[copyright]
[rules]
[control]
1:3.5.1-1:
[.dsc, use dget on this link to retrieve source package]
[changelog]
[copyright]
[rules]
[control]
binaries
kalign
action needed
Marked for autoremoval on 13 May:
#1132348
high
Version 1:3.4.0-1 of kalign is marked for autoremoval from testing on Wed 13 May 2026.
It is affected by
#1132348
.
The removal of kalign will also cause the removal of (transitive) reverse dependencies:
bioperl-run
,
libbio-tools-phylo-paml-perl
,
libbio-tools-run-alignment-clustalw-perl
,
libbio-tools-run-alignment-tcoffee-perl
,
psortb
.
You should try to prevent the removal by fixing these RC bugs.
The package has not entered testing even though the delay is over
normal
The package has not entered
testing
even though the 5-day delay is over.
Check why
.
Standards version of the package is outdated.
wishlist
The package should be updated to follow the last version of
Debian Policy
(Standards-Version
4.7.4
instead of
4.7.3
).
testing migrations
excuses
:
Migration status for kalign (1:3.4.0-1 to 1:3.5.1-1): BLOCKED: Rejected/violates migration policy/introduces a regression
Issues preventing migration:
∙ ∙ Autopkgtest for
bioperl-run
/1.7.3-13:
amd64
:
Failed (not a regression)
♻
(
reference
♻
),
arm64
:
Regression
♻
(
reference
♻
),
i386
:
Regression
♻
(
reference
♻
),
ppc64el
:
Regression
♻
(
reference
♻
),
riscv64
:
Regression
♻
(
reference
♻
),
s390x
:
Regression
♻
(
reference
♻
)
∙ ∙ Autopkgtest for
kalign
/1:3.5.1-1:
amd64
:
Pass
,
arm64
:
Pass
,
i386
:
Pass
,
ppc64el
:
Pass
,
riscv64
:
Pass
,
s390x
:
Pass
Additional info (not blocking):
∙ ∙ Updating kalign will fix bugs in testing:
#1132348
∙ ∙ Piuparts tested OK -
https://piuparts.debian.org/sid/source/k/kalign.html
∙ ∙ Reproduced on amd64
∙ ∙ Reproduced on arm64
∙ ∙ Reproduced on armhf
∙ ∙ Reproduced on i386
∙ ∙ Reproduced on ppc64el
∙ ∙ 44 days old (needed 5 days)
Not considered
news
[rss feed]
[
2026-02-27
]
Accepted kalign 1:3.5.1-1 (source) into unstable
(
Charles Plessy
)
[
2024-04-04
]
kalign 1:3.4.0-1 MIGRATED to testing
(
Debian testing watch
)
[
2024-04-02
]
Accepted kalign 1:3.4.0-1 (source) into unstable
(
Michael R. Crusoe
)
[
2024-03-28
]
kalign 1:3.3.5-2 MIGRATED to testing
(
Debian testing watch
)
[
2024-03-25
]
Accepted kalign 1:3.3.5-2 (source) into unstable
(
Michael R. Crusoe
)
[
2023-02-09
]
kalign 1:3.3.5-1 MIGRATED to testing
(
Debian testing watch
)
[
2023-02-06
]
Accepted kalign 1:3.3.5-1 (source) into unstable
(
Andreas Tille
)
[
2023-01-22
]
Accepted kalign 1:3.3.4-4~0exp0simde (source) into experimental
(
Michael R. Crusoe
)
(signed by:
Michael Robin Crusoe
)
[
2022-11-08
]
kalign 1:3.3.4-3 MIGRATED to testing
(
Debian testing watch
)
[
2022-11-08
]
kalign 1:3.3.4-3 MIGRATED to testing
(
Debian testing watch
)
[
2022-11-06
]
Accepted kalign 1:3.3.4-3 (source) into unstable
(
Nilesh Patra
)
[
2022-11-05
]
Accepted kalign 1:3.3.4-2 (source) into unstable
(
Nilesh Patra
)
[
2022-11-05
]
Accepted kalign 1:3.3.4-1 (source) into unstable
(
Nilesh Patra
)
[
2022-05-05
]
kalign 1:3.3.2-1 MIGRATED to testing
(
Debian testing watch
)
[
2022-05-02
]
Accepted kalign 1:3.3.2-1 (source) into unstable
(
Andreas Tille
)
[
2021-10-05
]
kalign 1:3.3.1-1 MIGRATED to testing
(
Debian testing watch
)
[
2021-10-01
]
Accepted kalign 1:3.3.1-1 (source) into unstable
(
Andreas Tille
)
[
2020-12-22
]
Accepted kalign 1:3.3-2~0exp0simde (source) into experimental
(
Michael R. Crusoe
)
(signed by:
Michael Robin Crusoe
)
[
2020-11-08
]
kalign 1:3.3-1 MIGRATED to testing
(
Debian testing watch
)
[
2020-11-06
]
Accepted kalign 1:3.3-1 (source) into unstable
(
Michael R. Crusoe
)
(signed by:
Michael Robin Crusoe
)
[
2020-08-07
]
kalign 1:3.2.3-4 MIGRATED to testing
(
Debian testing watch
)
[
2020-08-05
]
Accepted kalign 1:3.2.3-4 (source) into unstable
(
Nilesh Patra
)
[
2020-04-24
]
kalign 1:3.2.3-3 MIGRATED to testing
(
Debian testing watch
)
[
2020-04-20
]
Accepted kalign 1:3.2.3-3 (source) into unstable
(
Michael R. Crusoe
)
(signed by:
Michael Robin Crusoe
)
[
2020-04-02
]
kalign 1:3.2.3-2 MIGRATED to testing
(
Debian testing watch
)
[
2020-03-30
]
Accepted kalign 1:3.2.3-2 (source) into unstable
(
Michael R. Crusoe
)
(signed by:
Michael Robin Crusoe
)
[
2020-03-20
]
Accepted kalign 1:3.2.3-1 (source) into unstable
(
Pranav Ballaney
)
(signed by:
Andreas Tille
)
[
2019-01-10
]
kalign 1:2.03+20110620-5 MIGRATED to testing
(
Debian testing watch
)
[
2019-01-08
]
Accepted kalign 1:2.03+20110620-5 (source) into unstable
(
Andreas Tille
)
[
2018-02-18
]
kalign 1:2.03+20110620-4 MIGRATED to testing
(
Debian testing watch
)
1
2
bugs
[bug history graph]
all:
0
links
homepage
lintian
buildd:
logs
,
reproducibility
,
cross
popcon
browse source code
other distros
debci
ubuntu
[Information about Ubuntu for Debian Developers]
version:
1:3.4.0-1build1
![[bug history graph]](https://qa.debian.org/data/bts/graphs/k/kalign.png){kind=link}