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bcbio

toolkit for analysing high-throughput sequencing data

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general
  • source: bcbio (contrib)
  • version: 1.2.9-4
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Steffen Moeller [DMD]
  • arch: all
  • std-ver: 4.6.2
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.2.5-1
  • oldstable: 1.2.9-2
  • unstable: 1.2.9-4
versioned links
  • 1.2.5-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.2.9-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.2.9-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • bcbio
  • python3-bcbio
action needed
Debci reports failed tests high
  • unstable: neutral (log)
    The tests ran in 0:01:15
    Last run: 2025-08-27T16:31:21.000Z
    Previous status: unknown

  • testing: neutral (log)
    The tests ran in 0:01:33
    Last run: 2024-02-28T20:47:53.000Z
    Previous status: unknown

  • stable: fail (log)
    The tests ran in 0:00:20
    Last run: 2025-08-10T23:36:26.000Z
    Previous status: unknown

Created: 2025-08-11 Last update: 2025-09-15 01:34
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 5-day delay is over. Check why.
Created: 2025-07-20 Last update: 2025-09-15 01:32
lintian reports 6 warnings normal
Lintian reports 6 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2025-07-21 Last update: 2025-07-21 22:02
debian/patches: 8 patches to forward upstream low

Among the 8 debian patches available in version 1.2.9-4 of the package, we noticed the following issues:

  • 8 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2025-06-30 18:05
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.6.2).
Created: 2022-12-17 Last update: 2025-06-30 17:28
testing migrations
  • excuses:
    • Migrates after: mosdepth, umis
    • Migration status for bcbio (- to 1.2.9-4): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Updating bcbio would introduce bugs in testing: #928076
    • ∙ ∙ Build-Depends(-Arch): bcbio mosdepth (not considered)
    • ∙ ∙ Build-Depends(-Arch): bcbio umis (not considered)
    • Additional info:
    • ∙ ∙ Cannot be tested by piuparts (not a blocker) - (no link yet)
    • ∙ ∙ uninstallable on arch s390x (which is allowed), not running autopkgtest there
    • ∙ ∙ autopkgtest for bcbio/1.2.9-4: amd64: No tests, superficial or marked flaky ♻, arm64: No tests, superficial or marked flaky ♻, i386: No tests, superficial or marked flaky ♻, ppc64el: No tests, superficial or marked flaky ♻, riscv64: No tests, superficial or marked flaky ♻
    • ∙ ∙ 77 days old (needed 5 days)
    • Not considered
news
[rss feed]
  • [2025-06-30] Accepted bcbio 1.2.9-4 (source) into unstable (Alexandre Detiste)
  • [2025-02-17] Accepted bcbio 1.2.9-3 (source) into unstable (Andreas Tille) (signed by: Alexandre Detiste)
  • [2024-03-08] bcbio REMOVED from testing (Debian testing watch)
  • [2024-01-19] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
  • [2023-11-30] bcbio REMOVED from testing (Debian testing watch)
  • [2023-10-14] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
  • [2023-07-14] bcbio REMOVED from testing (Debian testing watch)
  • [2023-02-13] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
  • [2023-01-23] bcbio REMOVED from testing (Debian testing watch)
  • [2022-11-29] bcbio 1.2.9-2 MIGRATED to testing (Debian testing watch)
  • [2022-10-12] Accepted bcbio 1.2.9-2 (source all) into unstable (Andreas Tille)
  • [2022-08-22] Accepted bcbio 1.2.9-1 (source all) into unstable (Lance Lin) (signed by: Andreas Tille)
  • [2022-05-10] bcbio REMOVED from testing (Debian testing watch)
  • [2021-09-30] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
  • [2021-09-29] bcbio REMOVED from testing (Debian testing watch)
  • [2021-02-08] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
  • [2021-02-08] bcbio 1.2.5-1 MIGRATED to testing (Debian testing watch)
  • [2021-01-26] Accepted bcbio 1.2.5-1 (source) into unstable (Steffen Moeller)
  • [2020-11-06] Accepted bcbio 1.2.4-2 (source) into unstable (Andreas Tille)
  • [2020-09-25] Accepted bcbio 1.2.4-1 (source) into unstable (Steffen Moeller)
  • [2020-08-29] bcbio REMOVED from testing (Debian testing watch)
  • [2020-08-29] bcbio REMOVED from testing (Debian testing watch)
  • [2020-06-14] bcbio 1.2.0-2 MIGRATED to testing (Debian testing watch)
  • [2020-03-11] Accepted bcbio 1.2.0-2 (source) into unstable (Andreas Tille)
  • [2020-02-25] Accepted bcbio 1.2.0-1 (source all) into unstable (Steffen Moeller)
  • [2020-02-14] Accepted bcbio 1.1.9-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-12-11] Accepted bcbio 1.1.9-1 (source) into unstable (Steffen Moeller)
  • [2019-11-26] Accepted bcbio 1.1.8-1 (source) into unstable (Steffen Moeller)
  • [2019-11-08] Accepted bcbio 1.1.7-1 (source all) into unstable, unstable (Steffen Moeller)
  • [2019-08-14] Accepted bcbio 1.1.5-1 (source all) into unstable (Steffen Moeller)
  • 1
  • 2
bugs [bug history graph]
  • all: 1
  • RC: 1
  • I&N: 0
  • M&W: 0
  • F&P: 0
  • patch: 0
links
  • homepage
  • lintian (0, 6)
  • buildd: logs
  • popcon
  • browse source code
  • edit tags
  • other distros
  • screenshots
  • debian patches
  • debci
ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 1.2.9-4
  • 1 bug

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