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bedtools

suite of utilities for comparing genomic features

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general

source: bedtools (main)
version: 2.31.1+dfsg-2
maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
uploaders: Étienne Mollier [DMD] – Andreas Tille [DMD] – Charles Plessy [DMD]
arch: all any
std-ver: 4.6.2
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 2.27.1+dfsg-4
oldstable: 2.30.0+dfsg-1
stable: 2.30.0+dfsg-3
testing: 2.31.1+dfsg-2
unstable: 2.31.1+dfsg-2

versioned links

2.27.1+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.30.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.30.0+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.31.1+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

bedtools
bedtools-test

action needed

Multiarch hinter reports 1 issue(s) normal

There are issues with the multiarch metadata for this package.

bedtools-test could have its dependency on python3 annotated with :any

Created: 2023-06-24 Last update: 2025-05-02 04:06

lintian reports 77 warnings normal

Lintian reports 77 warnings about this package. You should make the package lintian clean getting rid of them.

Created: 2023-12-05 Last update: 2025-04-10 14:00

debian/patches: 5 patches to forward upstream low

Among the 6 debian patches available in version 2.31.1+dfsg-2 of the package, we noticed the following issues:

5 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2023-12-05 11:16

Standards version of the package is outdated. wishlist

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.2 instead of 4.6.2).

Created: 2024-04-07 Last update: 2025-02-27 13:25

news

[2023-12-09] bedtools 2.31.1+dfsg-2 MIGRATED to testing (Debian testing watch)
[2023-12-04] Accepted bedtools 2.31.1+dfsg-2 (source) into unstable (Étienne Mollier)
[2023-11-26] bedtools 2.31.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-11-24] Accepted bedtools 2.31.1+dfsg-1 (source) into unstable (Étienne Mollier)
[2023-11-21] bedtools 2.31.0+dfsg-2 MIGRATED to testing (Debian testing watch)
[2023-11-18] Accepted bedtools 2.31.0+dfsg-2 (source) into unstable (Étienne Mollier)
[2023-06-26] bedtools 2.31.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-06-23] Accepted bedtools 2.31.0+dfsg-1 (source) into unstable (Étienne Mollier)
[2023-05-03] bedtools 2.30.0+dfsg-3 MIGRATED to testing (Debian testing watch)
[2023-04-13] Accepted bedtools 2.30.0+dfsg-3 (source) into unstable (Andreas Tille)
[2021-09-04] bedtools 2.30.0+dfsg-2 MIGRATED to testing (Debian testing watch)
[2021-09-02] Accepted bedtools 2.30.0+dfsg-2 (source) into unstable (Andreas Tille)
[2021-01-30] bedtools 2.30.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2021-01-27] Accepted bedtools 2.30.0+dfsg-1 (source) into unstable (Étienne Mollier)
[2021-01-22] bedtools 2.29.2+dfsg-6 MIGRATED to testing (Debian testing watch)
[2021-01-17] Accepted bedtools 2.29.2+dfsg-6 (source) into unstable (Étienne Mollier)
[2021-01-04] Accepted bedtools 2.29.2+dfsg-5 (source) into unstable (Andreas Tille)
[2020-12-20] Accepted bedtools 2.29.2+dfsg-4 (source) into unstable (Andreas Tille)
[2020-05-09] bedtools 2.29.2+dfsg-3 MIGRATED to testing (Debian testing watch)
[2020-02-14] Accepted bedtools 2.29.2+dfsg-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-02-12] Accepted bedtools 2.29.2+dfsg-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
[2020-01-23] Accepted bedtools 2.29.2+dfsg-1 (source) into unstable (Steffen Moeller)
[2019-12-05] Accepted bedtools 2.29.0+dfsg-2 (source) into unstable (Andreas Tille)
[2019-11-06] Accepted bedtools 2.29.0+dfsg-1 (source) into unstable (Steffen Moeller)
[2019-09-01] Accepted bedtools 2.28.0+dfsg1-1 (source) into unstable (Andreas Tille)
[2019-07-26] Accepted bedtools 2.28.0+dfsg-3 (source amd64 all) into unstable (Steffen Moeller)
[2019-07-26] Accepted bedtools 2.28.0+dfsg-1 (source amd64 all) into unstable (Steffen Moeller)
[2019-02-24] bedtools 2.27.1+dfsg-4 MIGRATED to testing (Debian testing watch)
[2019-02-14] Accepted bedtools 2.27.1+dfsg-4 (source) into unstable (Charles Plessy)
[2019-02-07] Accepted bedtools 2.27.1+dfsg-3 (source) into unstable (Michael R. Crusoe) (signed by: Andreas Tille)

1
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bugs [bug history graph]

all: 0

links

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ubuntu

[Information about Ubuntu for Debian Developers]

version: 2.31.1+dfsg-2

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