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freebayes

Bayesian haplotype-based polymorphism discovery and genotyping

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general
  • source: freebayes (main)
  • version: 1.3.9-2
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD] – Brad Chapman [DMD]
  • arch: any
  • std-ver: 4.7.3
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.3.5-1
  • oldstable: 1.3.6-2
  • stable: 1.3.9-1
  • unstable: 1.3.9-2
  • exp: 1.3.7-1~exp
versioned links
  • 1.3.5-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.3.6-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.3.7-1~exp: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.3.9-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.3.9-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • freebayes
action needed
A new upstream version is available: 1.3.10 high
A new upstream version 1.3.10 is available, you should consider packaging it.
Created: 2026-03-15 Last update: 2026-05-17 11:30
Debci reports failed tests high
  • unstable: fail (log)
    The tests ran in 0:00:28
    Last run: 2026-05-03T01:59:02.000Z
    Previous status: unknown

  • testing: pass (log)
    The tests ran in 0:00:46
    Last run: 2026-03-20T06:47:54.000Z
    Previous status: unknown

  • stable: pass (log)
    The tests ran in 0:00:24
    Last run: 2025-11-08T20:41:30.000Z
    Previous status: unknown

Created: 2026-02-18 Last update: 2026-05-17 11:00
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 5-day delay is over. Check why.
Created: 2026-04-13 Last update: 2026-05-17 12:19
1 new commit since last upload, is it time to release? normal
vcswatch reports that this package seems to have new commits in its VCS but has not yet updated debian/changelog. You should consider updating the Debian changelog and uploading this new version into the archive.

Here are the relevant commit logs:
commit 70f8795e1cb6cf089744663846a5a41bea6e321b
Author: Michael R. Crusoe <2153-crusoe@users.noreply.salsa.debian.org>
Date:   Thu Apr 30 07:13:34 2026 +0000

    Update debian/gbp.conf
Created: 2026-04-30 Last update: 2026-05-12 03:30
lintian reports 3 warnings normal
Lintian reports 3 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2023-08-22 Last update: 2025-02-17 04:32
debian/patches: 5 patches to forward upstream low

Among the 5 debian patches available in version 1.3.9-2 of the package, we noticed the following issues:

  • 5 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2025-02-17 Last update: 2026-02-16 10:55
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.4 instead of 4.7.3).
Created: 2026-03-31 Last update: 2026-03-31 15:01
testing migrations
  • excuses:
    • Migrates after: libvcflib
    • Migration status for freebayes (- to 1.3.9-2): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Autopkgtest for cutesv/2.1.1-1: amd64: No tests, superficial or marked flaky ♻, arm64: No tests, superficial or marked flaky ♻, loong64: No tests, superficial or marked flaky ♻, ppc64el: No tests, superficial or marked flaky ♻, riscv64: Test triggered
    • ∙ ∙ Autopkgtest for freebayes/1.3.9-2: amd64: Failed ♻, arm64: Failed ♻, loong64: Failed ♻, ppc64el: Failed ♻, riscv64: Failed ♻
    • ∙ ∙ Build-Depends(-Arch): freebayes libvcflib
    • ∙ ∙ Depends: freebayes libvcflib
    • Additional info (not blocking):
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/f/freebayes.html
    • ∙ ∙ Reproduced on amd64 - info
    • ∙ ∙ Reproduced on arm64 - info
    • ∙ ∙ Reproduced on armhf - info
    • ∙ ∙ Reproduced on i386 - info
    • ∙ ∙ 91 days old (needed 5 days)
    • Not considered
news
[rss feed]
  • [2026-03-23] freebayes REMOVED from testing (Debian testing watch)
  • [2026-02-15] Accepted freebayes 1.3.9-2 (source) into unstable (Santiago Vila)
  • [2025-02-19] freebayes 1.3.9-1 MIGRATED to testing (Debian testing watch)
  • [2025-02-16] Accepted freebayes 1.3.9-1 (source) into unstable (Andreas Tille)
  • [2024-04-25] freebayes REMOVED from testing (Debian testing watch)
  • [2024-04-25] freebayes REMOVED from testing (Debian testing watch)
  • [2023-08-23] freebayes 1.3.7-1 MIGRATED to testing (Debian testing watch)
  • [2023-08-21] Accepted freebayes 1.3.7-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2023-08-21] freebayes 1.3.6-2 MIGRATED to testing (Debian testing watch)
  • [2023-08-02] freebayes REMOVED from testing (Debian testing watch)
  • [2023-03-09] Accepted freebayes 1.3.7-1~exp (source) into experimental (Andreas Tille)
  • [2022-11-04] freebayes 1.3.6-2 MIGRATED to testing (Debian testing watch)
  • [2022-11-01] Accepted freebayes 1.3.6-2 (source) into unstable (Andreas Tille)
  • [2022-01-23] freebayes 1.3.6-1 MIGRATED to testing (Debian testing watch)
  • [2022-01-21] Accepted freebayes 1.3.6-1 (source) into unstable (Andreas Tille)
  • [2021-10-09] freebayes 1.3.5-3 MIGRATED to testing (Debian testing watch)
  • [2021-10-07] Accepted freebayes 1.3.5-3 (source) into unstable (Andreas Tille)
  • [2021-08-18] freebayes 1.3.5-2 MIGRATED to testing (Debian testing watch)
  • [2021-08-15] Accepted freebayes 1.3.5-2 (source) into unstable (Nilesh Patra)
  • [2021-02-12] freebayes 1.3.5-1 MIGRATED to testing (Debian testing watch)
  • [2021-02-10] Accepted freebayes 1.3.5-1 (source) into unstable (Andreas Tille)
  • [2021-01-23] freebayes 1.3.3-2 MIGRATED to testing (Debian testing watch)
  • [2021-01-20] Accepted freebayes 1.3.3-2 (source) into unstable (Juhani Numminen) (signed by: Andreas Tille)
  • [2021-01-18] Accepted freebayes 1.3.3-1 (source) into unstable (Juhani Numminen) (signed by: Andreas Tille)
  • [2021-01-11] freebayes REMOVED from testing (Debian testing watch)
  • [2020-06-03] freebayes 1.3.2-3 MIGRATED to testing (Debian testing watch)
  • [2020-06-01] Accepted freebayes 1.3.2-3 (source) into unstable (Pranav Ballaney) (signed by: Andreas Tille)
  • [2020-02-22] freebayes 1.3.2-2 MIGRATED to testing (Debian testing watch)
  • [2020-02-16] Accepted freebayes 1.3.2-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-12-25] freebayes 1.3.2-1 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 1
  • RC: 0
  • I&N: 1
  • M&W: 0
  • F&P: 0
  • patch: 0
links
  • homepage
  • lintian (0, 3)
  • buildd: logs, exp, cross
  • popcon
  • browse source code
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  • debian patches
  • debci
ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 1.3.9-2
  • 1 bug

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