Source: adapterremoval Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Kevin Murray Section: science Priority: optional Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, libgtest-dev, markdown Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/adapterremoval Vcs-Git: https://salsa.debian.org/med-team/adapterremoval.git Homepage: https://github.com/MikkelSchubert/adapterremoval Rules-Requires-Root: no Package: adapterremoval Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Description: rapid adapter trimming, identification, and read merging of gene sequences This program searches for and removes remnant adapter sequences from High- Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal. AdapterRemoval can analyze both single end and paired end data, and can be used to merge overlapping paired-ended reads into (longer) consensus sequences. Additionally, the AdapterRemoval may be used to recover a consensus adapter sequence for paired-ended data, for which this information is not available. Package: adapterremoval-examples Architecture: all Depends: ${misc:Depends} Multi-Arch: foreign Description: rapid adapter trimming, identification, and read merging (example data) This program searches for and removes remnant adapter sequences from High- Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal. AdapterRemoval can analyze both single end and paired end data, and can be used to merge overlapping paired-ended reads into (longer) consensus sequences. Additionally, the AdapterRemoval may be used to recover a consensus adapter sequence for paired-ended data, for which this information is not available. . This package provides the example data. #Package: adapter-benchmark #Architecture: all #Depends: ${misc:Depends}, # python3, # adapterremoval, # cutadapt, # ea-utils, # flexbar, # scythe, # trimmomatic #Suggests: pirs #Description: benchmarking trimming adapters gene sequences # The program adapterremoval contains a benchmarking suite for differen # programs fullfilling a similar purpose to searche for and remove # remnant adapter sequences from High-Throughput Sequencing (HTS) data # and trims low quality bases from the 3' end of reads following adapter # removal. # . # This package provides the test suite adapted to the use with all # Debian packaged programs which are: adapterremoval, cutadapt, flexbar, # scythe and trimmomatic.