#!/usr/bin/make -f # -*- makefile -*- include /usr/share/dpkg/architecture.mk include /usr/share/mpi-default-dev/debian_defaults export DEB_BUILD_MAINT_OPTIONS = hardening=+all # FETK needs SuperLU, make sure the system library is used SUPERLU_INCLUDES = $(shell pkg-config --cflags-only-I superlu | sed "s/^-I//" ) SUPERLU_LIBRARIES = $(shell pkg-config --libs superlu | sed "s/^-l//" ) BUILDDIR := $(CURDIR)/obj-$(DEB_HOST_MULTIARCH) export CPPFLAGS := $(shell dpkg-buildflags --get CPPFLAGS) export CFLAGS := $(shell dpkg-buildflags --get CFLAGS) $(CPPFLAGS) -fcommon export CXXFLAGS := $(shell dpkg-buildflags --get CXXFLAGS) $(CPPFLAGS) export LDFLAGS := $(shell dpkg-buildflags --get LDFLAGS) -Wl,--as-needed %: dh $@ --with python3,sphinxdoc --buildsystem=cmake override_dh_auto_configure: dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=None \ -DAPBS_STATIC_BUILD=Off \ -DBUILD_DOC=Off -DBUILD_TOOLS=On \ -DENABLE_OPENMP=On -DENABLE_MPI=On \ -DENABLE_PYTHON=On -DBUILD_SHARED_LIBS=On \ -DENABLE_READLINE=Off -DENABLE_ZLIB=On \ -DFETCHCONTENT_SOURCE_DIR_FETK=$(CURDIR)/debian/external_deps/fetk \ -DRPC_CFLAGS=$(shell pkg-config --cflags libtirpc) \ -DBUILD_MALOC=Off execute_after_dh_auto_build-indep: export http_proxy=127.0.0.1:9 execute_after_dh_auto_build-indep: export https_proxy=127.0.0.1:9 execute_after_dh_auto_build-indep: PYTHONPATH=$(BUILDDIR)/tools/python sphinx-build -b html docs $(BUILDDIR)/docs/_build/html # HTML generator override_dh_auto_test: # run tests after installation execute_after_dh_auto_install: -(cd tests; PATH=$(CURDIR)/debian/tmp/usr/bin:$${PATH} LD_LIBRARY_PATH=$(CURDIR)/debian/tmp/usr/lib/$(DEB_HOST_MULTIARCH):$${LD_LIBRARY_PATH} PYTHONPATH=$${PYTHONPATH}:$(CURDIR)/tools/manip python3 apbs_tester.py -c test_cases.cfg; rm -rf __pycache__) override_dh_fixperms-indep: dh_fixperms for example in FKBP/1d7h-dmso/UHBD/pqr2qcd \ ion-pmf/runme.sh \ point-pmf/runme.sh \ protein-rna/postprocess.sh \ protein-rna/test.sh \ helix/Run_membrane-helix.sh \ protein-rna/run_apdx_files.sh; \ do \ chmod +x debian/apbs-data/usr/share/apbs/examples/$${example}; \ done for script in amber2charmm.sh \ param/pdb2pqr/amber2uhbd.sh \ qcd2pqr.awk; \ do \ chmod a+x debian/apbs-data/usr/share/apbs/tools/conversion/$${script}; \ done for example in bem-pKa/test_proteins \ pbsam-barn_bars; \ do \ chmod a-x debian/apbs-data/usr/share/apbs/examples/$${example}/*.pqr; \ done