Source: artfastqgenerator Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: science Priority: optional Build-Depends: debhelper (>= 11~), javahelper, default-jdk Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/med-team/artfastqgenerator Vcs-Git: https://salsa.debian.org/med-team/artfastqgenerator.git Homepage: https://sourceforge.net/projects/artfastqgen/ Package: artfastqgenerator Architecture: all Depends: ${java:Depends}, ${misc:Depends}, default-jre Description: outputs artificial FASTQ files derived from a reference genome ArtificialFastqGenerator takes the reference genome (in FASTA format) as input and outputs artificial FASTQ files in the Sanger format. It can accept Phred base quality scores from existing FASTQ files, and use them to simulate sequencing errors. Since the artificial FASTQs are derived from the reference genome, the reference genome provides a gold-standard for calling variants (Single Nucleotide Polymorphisms (SNPs) and insertions and deletions (indels)). This enables evaluation of a Next Generation Sequencing (NGS) analysis pipeline which aligns reads to the reference genome and then calls the variants. Package: artfastqgenerator-doc Architecture: all Section: doc Depends: ${misc:Depends} Description: outputs artificial FASTQ files derived from a reference genome (doc) ArtificialFastqGenerator takes the reference genome (in FASTA format) as input and outputs artificial FASTQ files in the Sanger format. It can accept Phred base quality scores from existing FASTQ files, and use them to simulate sequencing errors. Since the artificial FASTQs are derived from the reference genome, the reference genome provides a gold-standard for calling variants (Single Nucleotide Polymorphisms (SNPs) and insertions and deletions (indels)). This enables evaluation of a Next Generation Sequencing (NGS) analysis pipeline which aligns reads to the reference genome and then calls the variants. . This package contains the Java API documentation for artfastqgenerator. Package: artfastqgenerator-examples Architecture: all Depends: ${misc:Depends} Description: ou7puts artificial FASTQ files derived from a reference genome (examples) ArtificialFastqGenerator takes the reference genome (in FASTA format) as input and outputs artificial FASTQ files in the Sanger format. It can accept Phred base quality scores from existing FASTQ files, and use them to simulate sequencing errors. Since the artificial FASTQs are derived from the reference genome, the reference genome provides a gold-standard for calling variants (Single Nucleotide Polymorphisms (SNPs) and insertions and deletions (indels)). This enables evaluation of a Next Generation Sequencing (NGS) analysis pipeline which aligns reads to the reference genome and then calls the variants. . This package contains example data for artfastqgenerator.