Source: bali-phy Maintainer: Debian Med Packaging Team Uploaders: Benjamin Redelings Section: science Priority: optional Build-Depends: debhelper-compat (= 13), meson (>=0.53), libcairo2-dev, libeigen3-dev, nlohmann-json3-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev, librange-v3-dev Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/bali-phy Vcs-Git: https://salsa.debian.org/med-team/bali-phy.git Homepage: http://www.bali-phy.org Rules-Requires-Root: no Package: bali-phy Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}, python3 Recommends: r-base, gnuplot Suggests: figtree, seaview Description: Bayesian Inference of Alignment and Phylogeny BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot. . BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.