Source: bali-phy
Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
 Benjamin Redelings <benjamin.redelings@gmail.com>,
 Étienne Mollier <emollier@debian.org>,
Section: science
Build-Depends:
 debhelper-compat (= 14),
 cmake,
 libboost-chrono-dev,
 libboost-dev,
 libboost-filesystem-dev,
 libboost-json-dev,
 libboost-program-options-dev,
 libboost-random-dev,
 libcairo2-dev,
 libcereal-dev,
 libcli11-dev,
 libeigen3-dev,
 libfmt-dev,
 librange-v3-dev,
 libutf8proc-dev,
 libxxhash-dev,
 libzstd-dev,
 meson,
 nlohmann-json3-dev,
 pandoc,
Vcs-Browser: https://salsa.debian.org/med-team/bali-phy
Vcs-Git: https://salsa.debian.org/med-team/bali-phy.git
Homepage: https://www.bali-phy.org

Package: bali-phy
Architecture: any
Depends:
 python3,
 ${misc:Depends},
 ${perl:Depends},
 ${shlibs:Depends},
Recommends:
 gnuplot,
 r-base,
Suggests:
 figtree,
 seaview,
Description: Bayesian Inference of Alignment and Phylogeny
 BAli-Phy estimates multiple sequence alignments and evolutionary trees
 from unaligned DNA, amino acid, or codon sequences.  BAli-Phy uses MCMC
 to estimate evolutionary trees, positive selection, and branch lengths
 while averaging over alternative alignments. BAli-Phy can display
 alignment ambiguity graphically in an alignment uncertainty (AU) plot.
 .
 BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes
 and BEAST) using substitution models like GTR+gamma.  BAli-Phy automatically
 estimates relative rates for each gene.