Source: beagle Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Section: science Priority: optional Build-Depends: debhelper-compat (= 13), javahelper Build-Depends-Indep: default-jdk, libhtsjdk-java Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/beagle Vcs-Git: https://salsa.debian.org/med-team/beagle.git Homepage: https://faculty.washington.edu/browning/beagle/beagle.html Rules-Requires-Root: no Package: beagle Architecture: all Depends: ${java:Depends}, ${misc:Depends} Recommends: ${java:Recommends} Suggests: beagle-doc Description: Genotype calling, genotype phasing and imputation of ungenotyped markers Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments. Package: beagle-doc Architecture: all Multi-Arch: foreign Section: doc Depends: ${misc:Depends} Enhances: beagle Description: Documentation for Beagle Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments. . This package includes the Beagle API javadocs, and examples.