Source: beagle
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Dylan Aïssi <daissi@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12),
               javahelper
Build-Depends-Indep: default-jdk,
                     libhtsjdk-java
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/beagle
Vcs-Git: https://salsa.debian.org/med-team/beagle.git
Homepage: https://faculty.washington.edu/browning/beagle/beagle.html
Rules-Requires-Root: no

Package: beagle
Architecture: all
Depends: ${java:Depends},
         ${misc:Depends}
Recommends: ${java:Recommends}
Suggests: beagle-doc
Description: Genotype calling, genotype phasing and imputation of ungenotyped markers
 Beagle performs genotype calling, genotype phasing, imputation of ungenotyped
 markers, and identity-by-descent segment detection. Genotypic imputation works
 on phased haplotypes using a Li and Stephens haplotype frequency model.
 Beagle also implements the Refined IBD algorithm for detecting
 homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.

Package: beagle-doc
Architecture: all
Multi-Arch: foreign
Section: doc
Depends: ${misc:Depends}
Enhances: beagle
Description: Documentation for Beagle
 Beagle performs genotype calling, genotype phasing, imputation of ungenotyped
 markers, and identity-by-descent segment detection. Genotypic imputation works
 on phased haplotypes using a Li and Stephens haplotype frequency model.
 Beagle also implements the Refined IBD algorithm for detecting
 homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.
 .
 This package includes the Beagle API javadocs, and examples.