Source: bio-tradis Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: perl # Testsuite: autopkgtest-pkg-perl Priority: optional Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-perl-perl, libenv-path-perl, libexception-class-perl, libmoose-perl, libtest-exception-perl, libtest-files-perl, libtest-most-perl, libtest-simple-perl, libtext-csv-perl, libtry-tiny-perl, perl, samtools, smalt, tabix, bwa Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/bio-tradis Vcs-Git: https://salsa.debian.org/med-team/bio-tradis.git Homepage: https://github.com/sanger-pathogens/Bio-Tradis Rules-Requires-Root: no Package: bio-tradis Architecture: all Depends: ${misc:Depends}, ${perl:Depends}, libbio-perl-perl, libexception-class-perl, libmoose-perl, libtext-csv-perl, libtry-tiny-perl, smalt, samtools, tabix, r-base-core, r-cran-getopt, r-cran-mass Recommends: artemis, r-bioc-edger Description: analyse the output from TraDIS analyses of genomic sequences Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. . The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools. . Please note: You need to manually install BioConductor Edger which can not be distributed by Debian in recent version since it is using non-distributable code locfit.