Source: bioperl Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Steffen Moeller , Andreas Tille , Olivier Sallou Section: science Testsuite: autopkgtest-pkg-perl Priority: optional Build-Depends: debhelper-compat (= 12), # Unnecessary according to lintian, but building with sbuild shows the contrary. libmodule-build-perl Build-Depends-Indep: perl, rename, libio-string-perl, libdata-stag-perl, libtest-most-perl, # Recommended in Build.PL (we want them to run the tests) libace-perl, libalgorithm-munkres-perl, libarray-compare-perl, libbio-asn1-entrezgene-perl, libbio-samtools-perl, libclass-unload-perl, libcgi-pm-perl, libclone-perl, libconvert-binary-c-perl, libdbd-sqlite3-perl, libdbd-mysql-perl, libdbd-pg-perl, libgd-perl, libgraph-perl, libgraphviz-perl, libhtml-parser-perl, libhtml-tableextract-perl, liblist-moreutils-perl, libpath-class-perl, libperlio-eol-perl, libpostscript-perl, libset-scalar-perl, libsoap-lite-perl, libsort-naturally-perl, libspreadsheet-parseexcel-perl, libspreadsheet-writeexcel-perl, libstorable-perl, libsvg-perl, libsvg-graph-perl, libtest-memory-cycle-perl, libtest-pod-perl, libtest-weaken-perl, liburi-perl, libxml-dom-xpath-perl, libxml-parser-perl, libxml-sax-perl, libxml-sax-writer-perl, libxml-twig-perl, libxml-simple-perl, libxml-writer-perl, libxml-libxml-perl, libwww-perl, libyaml-perl, libtest-requiresinternet-perl, # Needed to avoid downloading DTDs during the tests and therefore fail when network is not available: libxml-sax-expatxs-perl Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/bioperl Vcs-Git: https://salsa.debian.org/med-team/bioperl.git Homepage: http://www.bioperl.org/ Rules-Requires-Root: no Package: bioperl Architecture: all Depends: libbio-perl-perl (= ${source:Version}), ${misc:Depends}, ${perl:Depends}, libtest-most-perl Recommends: bioperl-run, # for the following see #650412 # most of `binary -help` outputs perl-doc, # some libraries already in libbio-perl-perl's Recommends: # bp_biofetch_genbank_proxy libhttp-message-perl, libwww-perl, libcache-cache-perl, # bp_blast2tree libbio-perl-run-perl, # bp_bulk_load_gff libdbi-perl, # bp_chaos_plot libgd-gd2-perl, # bp_das_server libapache-dbi-perl, # bp_download_query_genbank liburi-perl, # bp_einfo # liburi-perl # libhttp-message-perl libxml-simple-perl, # bp_fast_load_gff # libdbi-perl # bp_fetch [not for local indexing] # bp_flanks # libhttp-message-perl # bp_genbank2gff # libhttp-message-perl # libdbi-perl # bp_genbank2gff3 libyaml-perl, # bp_hivq # libhttp-message-perl # libxml-simple-perl # bp_meta_gff # libdbi-perl # bp_netinstall # bp_pairwise_kaks # libbio-perl-run-perl # bp_process_wormbase libace-perl, # bp_query_entrez_taxa # bp_remote_blast # bp_revtrans-motif liblist-moreutils-perl, # bp_taxid4species libxml-twig-perl, # bp_taxonomy2tree libset-scalar-perl Suggests: groff-base Description: Perl tools for computational molecular biology The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. It is well-accepted throughout the community and used in many high-profile projects, e.g., Ensembl. . The recommended packages are needed to run some of the included binaries, for a detailed explanation including the specific Perl modules please see README.Debian. . The suggested package enhances the manual pages. Package: libbio-perl-perl Architecture: all Section: perl Depends: libio-string-perl, libdata-stag-perl, ${misc:Depends}, ${perl:Depends} # Temporary workaround as bioperl-run has not been split Breaks: libbio-perl-run-perl (<< 1.7.3), roary (<<3.13) Replaces: libbio-perl-run-perl (<< 1.7.3) Recommends: bioperl-run | libbio-perl-run-perl, # Recommended in Build.PL libace-perl, libalgorithm-munkres-perl, libarray-compare-perl, libbio-asn1-entrezgene-perl, libclone-perl, libconvert-binary-c-perl, libdbd-sqlite3-perl, libdbd-mysql-perl, libdbd-pg-perl, libgd-perl, libgraph-perl, libgraphviz-perl, libhtml-parser-perl, libhtml-tableextract-perl, liblist-moreutils-perl, libpostscript-perl, libset-scalar-perl, libsoap-lite-perl, libsort-naturally-perl, libspreadsheet-parseexcel-perl, libspreadsheet-writeexcel-perl, libstorable-perl, libsvg-perl, libsvg-graph-perl, liburi-perl, libxml-dom-xpath-perl, libxml-parser-perl, libxml-sax-perl, libxml-sax-writer-perl, libxml-simple-perl, libxml-twig-perl, libxml-writer-perl, libxml-libxml-perl, libwww-perl Suggests: bioperl, libxml-sax-expatxs-perl # Needed to avoid downloading DTDs. Description: BioPerl core perl modules BioPerl is a toolkit of perl modules useful in building bioinformatics solutions in Perl. It is built in an object-oriented manner so that many modules depend on each other to achieve a task. The collection of modules in libbio-perl-perl consist of the core of the functionality of bioperl.