#!/usr/bin/make -f include /usr/share/dpkg/default.mk export VERBOSE=1 # for cmake export SH_LIB_EXT=.so export HDF5_INC=/usr/include/hdf5/serial export HDF5_LIB=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial export BOOST_INC=/usr/include/boost export HTSLIB_INC=/usr/include/htslib export HTSLIB_LIB=/usr/lib/$(DEB_HOST_MULTIARCH) export PBBAM_INC=/usr/include export PBBAM_LIB=/usr/lib/$(DEB_HOST_MULTIARCH) export PBDATA_ROOT_DIR=/usr/include/pbseq export LIBBLASR_INC=$(PBDATA_ROOT_DIR)/alignment export LIBBLASR_LIB=/usr/lib/$(DEB_HOST_MULTIARCH) export LIBPBDATA_INC=$(PBDATA_ROOT_DIR)/pbdata export LIBPBDATA_LIB=/usr/lib/$(DEB_HOST_MULTIARCH) export LIBPBIHDF_INC=$(PBDATA_ROOT_DIR)/hdf export LIBPBIHDF_LIB=/usr/lib/$(DEB_HOST_MULTIARCH) # CPPFLAGS apparently aren't exported for bam2bax/bax2bam export DEB_CXXFLAGS_MAINT_PREPEND = $(CPPFLAGS) -I$(PBDATA_ROOT_DIR) %: dh $@ --parallel override_dh_auto_configure: ./configure.py --shared override_dh_auto_build: main bax2bam bam2bax; .PHONY: main main: dh_auto_build .PHONY: bax2bam bax2bam: utils/bax2bax/bin/bax2bam utils/bax2bax/bin/bax2bam: $(MAKE) -C utils/bax2bam .PHONY: bam2bax bam2bax: utils/bam2bax/bin/bam2bax utils/bam2bax/bin/bam2bax: $(MAKE) -C utils/bam2bax # Tests require data not available in the source distribution override_dh_auto_test: ; override_dh_auto_clean: override_dh_auto_configure $(MAKE) clean $(MAKE) -C utils/bam2bax clean $(MAKE) -C utils/bax2bam clean # This is created by configure.py $(RM) defines.mk