Source: bowtie Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Ognyan Kulev , Stephan Struckmann , Alexandre Mestiashvili Section: science Priority: optional Build-Depends: debhelper (>= 11), help2man, libtbb-dev, python, seqan-dev (>= 1.4), zlib1g-dev Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/bowtie Vcs-Git: https://salsa.debian.org/med-team/bowtie.git Homepage: http://bowtie-bio.sourceforge.net/ Package: bowtie Architecture: alpha any-amd64 arm64 mips64el ppc64 ppc64el s390x sparc64 Depends: ${shlibs:Depends}, ${misc:Depends}, python Suggests: bowtie-examples Description: Ultrafast memory-efficient short read aligner This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run. . Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). Package: bowtie-examples Architecture: all Depends: ${misc:Depends} Recommends: bowtie Enhances: bowtie Description: Examples for bowtie, the ultrafast memory-efficient short read aligner This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run. . Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). . This package provides some example data to work with bowtie.