Source: bowtie2 Maintainer: Debian Med Packaging Team Uploaders: Alexandre Mestiashvili , Andreas Tille Section: science Priority: optional Build-Depends: debhelper-compat (= 13), help2man, pandoc , libtbb-dev, python3, liblocal-lib-perl, libtest-deep-perl, libclone-perl, libfile-which-perl, zlib1g-dev, libsimde-dev Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/bowtie2 Vcs-Git: https://salsa.debian.org/med-team/bowtie2.git Homepage: https://bowtie-bio.sourceforge.net/bowtie2 Rules-Requires-Root: no Package: bowtie2 Architecture: any-amd64 arm64 mips64el ppc64el ia64 m68k ppc64 riscv64 sh4 sparc64 Depends: python3, ${misc:Depends}, ${shlibs:Depends}, ${perl:Depends} Suggests: bowtie2-examples Built-Using: ${simde:Built-Using} Description: ultrafast memory-efficient short read aligner is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. . Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes Package: bowtie2-examples Architecture: all Multi-Arch: foreign Depends: ${misc:Depends} Recommends: bowtie2 Enhances: bowtie2 Description: Examples for bowtie2 An ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. . Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes . This package provides some example data to work with bowtie2.