Source: canu
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>
Section: science
Build-Depends: debhelper-compat (= 13),
               architecture-is-64-bit [!x32],
               libboost-dev,
               libmeryl-dev,
               libsnappy-dev,
# For File::Path
               libfilesys-df-perl,
               mhap,
               zlib1g-dev,
               libcurl4-openssl-dev,
               liblzma-dev,
               libbz2-dev,
               debhelper
Standards-Version: 4.7.4
Vcs-Browser: https://salsa.debian.org/med-team/canu
Vcs-Git: https://salsa.debian.org/med-team/canu.git
Homepage: https://canu.readthedocs.org/en/latest/
Rules-Requires-Root: no

Package: canu
Architecture: any
Depends: ${shlibs:Depends},
         ${misc:Depends},
         ${perl:Depends},
         libfilesys-df-perl,
         mhap,
         gnu-which,
         samtools,
         gnuplot-nox | gnuplot
Suggests: nanopolish
Description: single molecule sequence assembler for genomes
 Canu is a fork of the Celera Assembler, designed for high-noise
 single-molecule sequencing (such as the PacBio RS II or Oxford
 Nanopore MinION).
 .
 Canu is a hierarchical assembly pipeline which runs in four steps:
 .
  * Detect overlaps in high-noise sequences using MHAP
  * Generate corrected sequence consensus
  * Trim corrected sequences
  * Assemble trimmed corrected sequences
 Canu has reached end of life. It hasn't seen active development since
 around 2021 and has not been tuned or tested on more recent data.
 Unless you're assembling reads from that era, use a more recent
 assembler.