#!/usr/bin/make -f

#DH_VERBOSE = 1
include /usr/share/dpkg/default.mk

#export CPPFLAGS += -I/usr/include/kmer
export CFLAGS := $(CPPFLAGS) $(CFLAGS)
export CXXFLAGS := $(CPPFLAGS) $(CXXFLAGS)

export DEB_BUILD_MAINT_OPTIONS=hardening=+all

%:
	dh $@ --sourcedirectory=src/

override_dh_auto_build:
	dh_auto_build
	builddir=*-*/; \
	find $$builddir \
	-name OverlapMhap.pm \
	-exec sed -i 's#\(\s*my \$$javaPath = \).*#\1 "/usr/lib/jvm/java-8-openjdk-$(DEB_HOST_ARCH)/bin/java";#' {} +

override_dh_install:
	dh_install
	for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
	    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
	done