Source: changeo
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>, Nilesh Patra <npatra974@gmail.com>
Section: science
Testsuite: autopkgtest-pkg-python
Priority: optional
Build-Depends: debhelper-compat (= 13),
               dh-python,
               python3-all,
               python3-setuptools
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/changeo
Vcs-Git: https://salsa.debian.org/med-team/changeo.git
Homepage: https://changeo.readthedocs.io
Rules-Requires-Root: no

Package: changeo
Architecture: all
Depends: ${python3:Depends},
         ${misc:Depends}
Recommends: python3-biopython (>=1.65),
            python3-pandas (>= 0.15),
            python3-scipy,
            python3-presto (>= 0.6.2),
            python3-airr
Description: Repertoire clonal assignment toolkit (Python 3)
 Change-O is a collection of tools for processing the output of V(D)J
 alignment tools, assigning clonal clusters to immunoglobulin (Ig)
 sequences, and reconstructing germline sequences.
 .
 Dramatic improvements in high-throughput sequencing technologies now
 enable large-scale characterization of Ig repertoires, defined as the
 collection of trans-membrane antigen-receptor proteins located on the
 surface of B cells and T cells. Change-O is a suite of utilities to
 facilitate advanced analysis of Ig and TCR sequences following germline
 segment assignment. Change-O handles output from IMGT/HighV-QUEST
 and IgBLAST, and provides a wide variety of clustering methods for
 assigning clonal groups to Ig sequences. Record sorting, grouping,
 and various database manipulation operations are also included.
 .
 This package installs the library for Python 3.