Source: cufflinks
Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
 Alexandre Mestiashvili <mestia@debian.org>,
 Andreas Tille <tille@debian.org>,
 Charles Plessy <plessy@debian.org>,
Section: non-free/science
XS-Autobuild: yes
Build-Depends:
 debhelper-compat (= 13),
 dh-sequence-python3,
 help2man,
 libboost-dev,
 libboost-filesystem-dev,
 libboost-serialization-dev,
 libboost-thread-dev,
 libbam-dev,
 zlib1g-dev,
 python3,
 libeigen3-dev,
Vcs-Browser: https://salsa.debian.org/med-team/cufflinks
Vcs-Git: https://salsa.debian.org/med-team/cufflinks.git
Homepage: https://cufflinks.cbcb.umd.edu

Package: cufflinks
Architecture: any
Depends:
 ${shlibs:Depends},
 ${misc:Depends},
 ${python3:Depends},
Recommends:
 gffread,
Enhances:
 tophat,
Description: Transcript assembly, differential expression and regulation for RNA-Seq
 Cufflinks assembles transcripts, estimates their abundances, and
 tests for differential expression and regulation in RNA-Seq samples.
 It accepts aligned RNA-Seq reads and assembles the alignments into a
 parsimonious set of transcripts. Cufflinks then estimates the
 relative abundances of these transcripts based on how many reads
 support each one.
 .
 This package provides the binary of cufflinks and associated tools, i.e.
 compress_gtf, cuffcompare, cuffdiff, cuffmerge, cuffnorm, cuffquant and
 gtf_to_sam.