Source: emboss Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Nelson A. de Oliveira , Andreas Tille Section: science Priority: optional Build-Depends: debhelper (>= 11~), # javahelper, libx11-dev, x11proto-core-dev, libgdchart-gd2-xpm-dev, zlib1g-dev, libpng-dev, libexpat1-dev, libhpdf-dev, default-libmysqlclient-dev, libpq-dev, antiword, sharutils, tcsh | csh | c-shell, # Needed until the following is solved: https://sourceforge.net/tracker/?func=detail&aid=3033326&group_id=93650&atid=605031 default-jdk, ant # #Build-Depends-Indep: default-jdk Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/med-team/emboss Vcs-Git: https://salsa.debian.org/med-team/emboss.git Homepage: http://emboss.sourceforge.net Package: emboss Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (= ${binary:Version}), emboss-data (= ${source:Version}) Recommends: primer3, dialign Suggests: emboss-doc, emboss-test, embassy, clustalw Description: European molecular biology open software suite EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages. Package: emboss-data Architecture: all Depends: ${misc:Depends} Description: data files for the EMBOSS package EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages. . This package includes data files needed by EMBOSS, the European Molecular Biology Open Software Suite. Package: emboss-doc Architecture: all Section: doc Depends: ${misc:Depends} Suggests: evince | pdf-viewer | postscript-viewer Description: documentation for EMBOSS EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages. . This package includes non-essential user documentation for EMBOSS, the European Molecular Biology Open Software Suite. Package: emboss-test Architecture: all Section: misc Depends: ${misc:Depends} Recommends: tcsh | csh | c-shell Suggests: valgrind Description: test files for the EMBOSS package EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages. . This package includes test files for EMBOSS, the European Molecular Biology Open Software Suite. . It is a good idea to use the data from this package for your bug reports when possible. Package: emboss-lib Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Conflicts: libajax6, libajax6-dev, libnucleus6, libnucleus6-dev Replaces: libajax6, libajax6-dev, libnucleus6, libnucleus6-dev Description: EMBOSS Libraries This package contains the core libraries of the European Molecular Biology Open Software Suite, EMBOSS. . AJAX covers standard data structures, including strings, sequences, file handles, queues, hashes, heaps, lists, dictionaries, trees and dynamic arrays. It also covers standard algorithms including comparisons, pattern matching, sorting, and iterators. AJAX will also provide a set of high level graphics functions suited to the needs of sequence analysis applications. . The NUCLEUS library provides higher-level functions specific to molecular sequence analysis, including sequence comparisons, translation, codon usage and annotation. . It also contains a eplplot, an EMBOSS, a fork of the plplot library. . In Debian, these libraries are to be considered private. Package: jemboss Architecture: all Depends: ${shlibs:Depends}, ${misc:Depends}, emboss, emboss-data, default-jre # libgnujaf-java Description: graphical user interface to EMBOSS EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages. . Jemboss is a Graphical User Interface (GUI) to EMBOSS, the European Molecular Biology Open Software Suite. It is part of the EMBOSS distribution.