htslib (1.9-12~deb10u1) buster; urgency=medium
* Rebuild for buster.
-- Andreas Beckmann <anbe@debian.org> Sun, 18 Jul 2021 21:31:48 +0200
htslib (1.9-12) unstable; urgency=medium
* Fix for the autopkgtest on i386 means we can re-enable it! (Closes: #942580)
-- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 09 Dec 2019 19:06:02 +0100
htslib (1.9-11) unstable; urgency=medium
* Install README at request of upstream
* Stop building on any-i386
Closes: #927353
-- Andreas Tille <tille@debian.org> Wed, 24 Apr 2019 08:51:48 +0200
htslib (1.9-10) unstable; urgency=medium
* Bring the libdeflate, GCS, and S3 updates back to unstable.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 16 Jan 2019 05:23:22 -0800
htslib (1.9-10~1libdeflate) experimental; urgency=medium
* Enable GCS and AWS S3 backends.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 16 Jan 2019 00:27:21 -0800
htslib (1.9-10~0libdeflate) experimental; urgency=medium
* Try libdeflate again.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 15 Jan 2019 07:01:58 -0800
htslib (1.9-9) unstable; urgency=medium
* Bring the ppc64el & i386 pkg-config enhancements to unstable.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 15 Jan 2019 06:13:44 -0800
htslib (1.9-9~floatingpoint0) experimental; urgency=low
* add SSE flags for i386 to the pkg-config.
* Try the ppc64el targeted floating point patch again & re-enable -O2
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 02 Jan 2019 06:34:33 -0800
htslib (1.9-8) unstable; urgency=medium
* Disable optimization on ppc64el to unblock this and many other packages
migration to testing.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 31 Dec 2018 07:08:13 -0800
htslib (1.9-7) unstable; urgency=medium
* Bring i386 build enhancements to unstable.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 19 Dec 2018 07:30:24 -0800
htslib (1.9-7~1~i386~1) experimental; urgency=medium
* Turn on SSE for i386, as suggested at
https://github.com/samtools/htslib/issues/565#issuecomment-448028771
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 18 Dec 2018 00:27:40 -0800
htslib (1.9-7~0~i386~gcc7~1) experimental; urgency=medium
* Try dropping to gcc-7 on i386*
-- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 10 Dec 2018 18:02:16 -0800
htslib (1.9-6) unstable; urgency=medium
* Revert libdeflate for DEFLATE based (de)compression and its crc32
implementation.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 05 Dec 2018 22:59:23 -0800
htslib (1.9-5) unstable; urgency=medium
* Add libdeflate for DEFLATE based (de)compression and its crc32
implementation.
* Re-add mipsel to tabix & libhts-dev as well. (Closes: #915404)
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 04 Dec 2018 20:56:12 -0800
htslib (1.9-4) unstable; urgency=medium
* Add Breaks: python-pysam (<< 0.15~), python3-pysam (<< 0.15~)
(Thanks to Graham Inggs <ginggs@debian.org>)
Closes: #911492
-- Andreas Tille <tille@debian.org> Sun, 02 Dec 2018 07:54:46 +0100
htslib (1.9-3) unstable; urgency=medium
* debian/control: drop *i386. Closes: #905438.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sun, 14 Oct 2018 09:53:04 -0700
htslib (1.9-2) unstable; urgency=medium
* Depends: zlib1g-dev
Closes: #908501
* Remove unused lintian overrides
* Standards-Version: 4.2.1
-- Andreas Tille <tille@debian.org> Wed, 12 Sep 2018 21:22:18 +0200
htslib (1.9-1) experimental; urgency=medium
* Team upload.
* New upstream version. Some symbols were added, others were removed:
- cram_to_bam was removed
- fai_build_core was removed
* Updated symbols list
* Introduced -flto
-- Steffen Moeller <moeller@debian.org> Thu, 26 Jul 2018 18:54:12 +0200
htslib (1.8-1) experimental; urgency=medium
* New upstream version
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* debhelper 11
* Fix symbols file.
Note: version 1.8 drops symbol cram_nop_decode_reset without bumping
soversion but this should be no issue according to upstream
(https://github.com/samtools/htslib/issues/695)
-- Andreas Tille <tille@debian.org> Fri, 27 Apr 2018 17:16:43 +0200
htslib (1.7-2) unstable; urgency=medium
* Move all needed files into htslib-test package
Closes: #890303
* Document how to test the package
* Update symbols file
-- Andreas Tille <tille@debian.org> Wed, 14 Feb 2018 13:13:18 +0100
htslib (1.7-1) unstable; urgency=medium
* Team upload.
* New upstream version.
* Standards-Version: 4.1.3
* win/* files no longer in upstream source tree, affecting -test package
-- Steffen Moeller <moeller@debian.org> Mon, 12 Feb 2018 18:59:19 +0100
htslib (1.6-4) unstable; urgency=medium
* Fix autopkgtest: Ship new files win/rand.c and win/rand.h
in htslib-test (Closes: #866137)
-- Graham Inggs <ginggs@debian.org> Thu, 21 Dec 2017 15:03:36 +0000
htslib (1.6-3) unstable; urgency=medium
* Ship a copy of cram headers in htslib-test instead of
using symlinks (Closes: #866137)
* Fix autopkgtest on i386 with GCC 7, see #881149
-- Graham Inggs <ginggs@debian.org> Wed, 20 Dec 2017 14:53:46 +0000
htslib (1.6-2) unstable; urgency=medium
* Fix version of new symbols
* Remove links that were provided to enable build of previous versions
of bcftools but are not needed any more
* Remove tabix dependency which was provided to enable build of a
previous version of bcftools
* Make sure no remainings of build time test will occur in test data
package
* Add missing override
-- Andreas Tille <tille@debian.org> Thu, 14 Dec 2017 15:37:03 +0100
htslib (1.6-1) experimental; urgency=medium
* New upstream version
* Switch to default Debian Med repository layout
* Remove debian/patches/literal_version.patch since upstream stops
running make to get the version number
* Update symbols file
-- Andreas Tille <tille@debian.org> Mon, 11 Dec 2017 14:26:11 +0100
htslib (1.5-6) unstable; urgency=medium
* Do not install htslib*.mk fragments
Closes: #881360
-- Andreas Tille <tille@debian.org> Mon, 11 Dec 2017 13:58:23 +0100
htslib (1.5-5) unstable; urgency=medium
[ Graham Inggs ]
* Extend i386 fix to hurd and kfreebsd
[ Helmut Grohne ]
* Fix FTCBFS: Let dh_auto_configure pass --host to ./configure
Closes: #879885
[ Andreas Tille ]
* Fix issues with private cram headers
- Provide cram headers in separate package libhts-private-dev.install
Closes: #881170
- Deactivate fix_pkg-config.patch
Closes: #881359
* Standards-Version: 4.1.2
-- Andreas Tille <tille@debian.org> Sun, 10 Dec 2017 09:00:27 +0100
htslib (1.5-4) unstable; urgency=medium
* Fix build on i386 (Thanks to Graham Inggs <ginggs@debian.org>)
Closes: #881149
-- Andreas Tille <tille@debian.org> Mon, 20 Nov 2017 22:42:09 +0100
htslib (1.5-3) unstable; urgency=medium
* Team upload
[ Diane Trout ]
* Restore libhts2.symbols and update for changes from 1.4.1 and 1.5
versions of htslib. (Closes: #879886)
[ Graham Inggs ]
* Update 877670.patch as it was applied upstream
-- Diane Trout <diane@ghic.org> Fri, 10 Nov 2017 12:38:12 +0100
htslib (1.5-2) unstable; urgency=medium
* Apply patch provided by Graham Inggs <ginggs@debian.org> to fix FTBFS
on armel armhf and ppc64el of bcftools
Closes: #877670
* Standards-Version: 4.1.1
-- Andreas Tille <tille@debian.org> Wed, 08 Nov 2017 08:24:26 +0100
htslib (1.5-1) unstable; urgency=medium
* Team upload
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.0.0 (no changes needed)
* do not parse d/changelog explicitly
* hardening=+all
* install htslib*.mk files that are used in bcftools
[ Steffen Moeller ]
* [upstream/metadata] Added reference to OMICtools
[ Matthias Klumpp ]
* libhts-dev: Depend on missing liblzma-dev
* Wrap and sort
-- Matthias Klumpp <mak@debian.org> Thu, 03 Aug 2017 22:56:42 -0400
htslib (1.4.1-5) unstable; urgency=medium
* Team upload
* Dereference symlinks to fix autopkgtest (Closes: #866137)
-- Graham Inggs <ginggs@debian.org> Wed, 19 Jul 2017 10:37:52 +0200
htslib (1.4.1-4) unstable; urgency=medium
* Team upload
* Fix FTBFS on s390x and sparc64, thanks Adrian Bunk (Closes: #865010)
-- Graham Inggs <ginggs@debian.org> Tue, 18 Jul 2017 00:49:30 +0200
htslib (1.4.1-3) unstable; urgency=medium
* Team upload.
* Fix FTBFS on i386. Thanks to Adrian Bunk for the patch.
Closes: #865012
-- Sascha Steinbiss <satta@debian.org> Mon, 17 Jul 2017 18:25:56 +0200
htslib (1.4.1-2) unstable; urgency=medium
* Create symlinks only for arch=indep target when target dir exists
Closes: #864979
-- Andreas Tille <tille@debian.org> Sun, 18 Jun 2017 14:19:22 +0200
htslib (1.4.1-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Sun, 18 Jun 2017 00:17:35 +0200
htslib (1.4-3) experimental; urgency=medium
* add the cram_to_bam function to the public interface of htslib because
it is used by code in Sambamba
-- Andreas Tille <tille@debian.org> Thu, 04 May 2017 10:57:31 +0200
htslib (1.4-2) experimental; urgency=medium
* Include htsfile binary into tabix package since its used by manta
package
-- Andreas Tille <tille@debian.org> Tue, 02 May 2017 15:42:11 +0200
htslib (1.4-1) experimental; urgency=medium
* New upstream version
* Drop autoconf from Build-Depends
* Add libbz2-dev and liblzma-dev to Build-Depends
* Remove binary files from test results
* Remove symbols file
* Change library name to match soname
-- Andreas Tille <tille@debian.org> Tue, 21 Mar 2017 17:44:03 +0100
htslib (1.3.2-3) experimental; urgency=medium
* Install header files from cram dir in -dev package since these are
used in libseqlib
* Fix pkg-config
-- Andreas Tille <tille@debian.org> Fri, 10 Feb 2017 08:46:29 +0100
htslib (1.3.2-2) unstable; urgency=medium
* Add build-essential and @builddeps@ to autopkgtest
* debhelper 10
* d/watch: version=4
-- Andreas Tille <tille@debian.org> Sat, 14 Jan 2017 19:23:52 +0100
htslib (1.3.2-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Fri, 04 Nov 2016 12:58:19 +0100
htslib (1.3.1-3) unstable; urgency=medium
* Fix build on hurd (thanks for the patch to Svante Signell
<svante.signell@gmail.com>)
Closes: #836190
* Add myself to uploaders
-- Andreas Tille <tille@debian.org> Thu, 01 Sep 2016 10:01:23 +0200
htslib (1.3.1-2) unstable; urgency=medium
[ Canberk Koç ]
* Team upload.
* Autopktest added
[ Andreas Tille ]
* hardening=+bindnow
-- Canberk Koç <canberkkoc@gmail.com> Wed, 03 Aug 2016 04:21:17 +0300
htslib (1.3.1-1) unstable; urgency=medium
36bf59a Merge tag '1.3.1' into debian/unstable
559f8b4 Remove add_largefile.patch, applied upstream.
7163afb Update symbols file. Missing _vcf_parse_format@Base and fai_read@Base.
c2c1df3 Build-depend on libcurl4-gnutls-dev and libssl-dev.
3b219b8 Enable libcurl.
9101580 Conforms to the Policy version 3.9.8.
-- Charles Plessy <plessy@debian.org> Mon, 25 Apr 2016 22:28:11 +0900
htslib (1.3-2) unstable; urgency=medium
* Team upload
[ Steffen Moeller and Jon Ison ]
* Introduction of EDAM annotation
[ Sascha Steinbiss ]
* Include upstream patch for large file support
* Run configure as part of the build
-- Sascha Steinbiss <sascha@steinbiss.name> Mon, 08 Feb 2016 16:46:35 +0000
htslib (1.3-1) unstable; urgency=medium
* Team upload
* New upstream version
* Ignore metadata files different between git and tarball
-- Sascha Steinbiss <sascha@steinbiss.name> Sat, 30 Jan 2016 12:16:06 +0000
htslib (1.2.1-2) unstable; urgency=medium
* Team upload
* Enable build on hurd-i386
Closes: #793512
* More verbose description vor -dev and -test package
* Fix lintian override
* Verified Mayhem bug report which is solved in this version
Closes: #716376
-- Andreas Tille <tille@debian.org> Wed, 09 Dec 2015 17:00:47 +0100
htslib (1.2.1-1) unstable; urgency=medium
0662716 Merge tag '1.2.1' into debian/unstable
084f27d Install NEWS as upstream changelog.
316fb96 Override a Lintian false positive.
3363679 Clean test directory.
69bf167 Corrected a typo in tabix description.
-- Charles Plessy <plessy@debian.org> Mon, 25 May 2015 13:35:03 +0900
htslib (1.1-1) unstable; urgency=medium
1357fbd Merge tag '1.1' into debian/unstable
87549cd Updated symbols file. One symbol is missing.
873ea9b Removed orphan paragraph in machine-readable copyright file.
49de2b9 Allow parallel build.
7fe3bb5 Normalise control file (VCS-Browser, Pre-Depends).
0e5e9e6 Conforms to Policy 3.9.6.
-- Charles Plessy <plessy@debian.org> Wed, 24 Sep 2014 21:24:11 +0900
htslib (1.0-2) unstable; urgency=medium
Uploaded to unstable (see previous changelog from experimental).
-- Charles Plessy <plessy@debian.org> Tue, 16 Sep 2014 20:27:04 +0900
htslib (1.0-1) experimental; urgency=low
cc559b8 Merged with upstream's master branch.
74b9d7b Build on the master branch.
04815a7 New major version (libhts0 -> libhts1).
98c18ca Updated symbols file.
22fef0c Install pkgconfig file.
420896b Override PACKAGE_VERSION to avoid tags with a slash in the name.
79b5d4e Use the Debian package version as PACKAGE_VERSION.
72b5c4a Finally use the 3.0 (quilt) format in single-debian-patch mode.
d870946 Adjusted substitution variables following dpkg's warnings.
9469458 Removed debug command accidentally introduced.
8c7f7d4 Replace the old tabix package from the tabix source package.
-- Charles Plessy <plessy@debian.org> Sun, 17 Aug 2014 20:12:28 +0900
htslib (0.2.0~rc3-1) unstable; urgency=low
* Initial release. (Closes: #729282)
-- Charles Plessy <plessy@debian.org> Sat, 16 Nov 2013 15:35:03 +0900