Source: iva Standards-Version: 4.7.4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Jorge Soares , Sascha Steinbiss , Section: science Build-Depends: debhelper-compat (= 14), dh-sequence-python3, libssl-dev, bioperl, fastaq, kmc, help2man, mummer, python3, python3-setuptools, python3-packaging, python3-numpy, python3-networkx, python3-pysam, python3-pytest, samtools, smalt, default-jdk-headless, Vcs-Browser: https://salsa.debian.org/med-team/iva Vcs-Git: https://salsa.debian.org/med-team/iva.git Homepage: https://github.com/sanger-pathogens/iva Package: iva Architecture: any Depends: ${misc:Depends}, ${python3:Depends}, ${perl:Depends}, fastaq, kmc, mummer, smalt, samtools, python3-numpy, python3-networkx, python3-pysam, default-jre-headless, Recommends: r-base-core, bioperl, trimmomatic, Suggests: iva-examples Description: iterative virus sequence assembler IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high depth. . IVA's main algorithm works by iteratively extending contigs using aligned read pairs. Its input can be just read pairs, or additionally you can provide an existing set of contigs to be extended. Alternatively, it can take reads together with a reference sequence. Package: iva-examples Architecture: all Depends: ${misc:Depends}, Suggests: iva Description: iterative virus sequence assembler - test data IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high depth. . IVA's main algorithm works by iteratively extending contigs using aligned read pairs. Its input can be just read pairs, or additionally you can provide an existing set of contigs to be extended. Alternatively, it can take reads together with a reference sequence. . Just test data are provided in a separate package.