jalview (2.11.4.0+dfsg-3) unstable; urgency=medium * Upload to unstable after fixes in experimental -- Pierre Gruet Sun, 06 Oct 2024 09:40:55 +0200 jalview (2.11.4.0+dfsg-3~exp1) experimental; urgency=medium * Waiting a bit for the launcher to start * Launching autopkgtest with xvfb-run to avoid errors due to headless environment -- Pierre Gruet Sat, 05 Oct 2024 23:48:52 +0200 jalview (2.11.4.0+dfsg-3~exp0) experimental; urgency=medium * Putting example files in the working directory of the autopkgtest * Disabling unneeded Java version checks at startup -- Pierre Gruet Fri, 04 Oct 2024 16:15:33 +0200 jalview (2.11.4.0+dfsg-2) unstable; urgency=medium * Restoring jalview invocation in the wrapper, with no HOME overriding -- Pierre Gruet Wed, 02 Oct 2024 16:44:33 +0200 jalview (2.11.4.0+dfsg-1) unstable; urgency=medium * New upstream version 2.11.4.0+dfsg * Refreshing patches * Adding commons-math3 to the (build-)dependencies * Raising Standards version to 4.7.0 (no change) * Raising d/copyright years * Adding URL in the MetaInfo file * Overriding user.home in the wrapper so that autopkgtests succeed with no /home directory -- Pierre Gruet Wed, 25 Sep 2024 15:54:05 +0200 jalview (2.11.3.1+dfsg-1) unstable; urgency=medium * New upstream version 2.11.3.1+dfsg * Refreshing patches * Refreshing d/copyright * Updating the list of files to exclude when repacking * Adding guava to the needed libraries for the tests * Reworking the build.gradle file * Excluding one more test using unpackaged features * Complying with the syntax of Debian-packaged groovy * Using a look and feel different from the unpackaged flatlaf * Managing the test log by grepping it for number of tests and successes, as dh_auto_test fails even if all tests are successful * Adding Lintian overrides for files with very long lines -- Pierre Gruet Thu, 30 Nov 2023 15:13:34 +0100 jalview (2.11.2.7+dfsg-1) unstable; urgency=medium * New upstream version 2.11.2.7+dfsg * Refreshing patches * Excluding the jar files now bundled in dist/ * Fixing the clean target (Closes: #1045599) * Enhancing build reproducibility by using the timestamp of d/changelog instead of the build time one in build.gradle -- Pierre Gruet Sun, 08 Oct 2023 23:17:17 +0200 jalview (2.11.2.6+dfsg-1) unstable; urgency=medium * New upstream version 2.11.2.6+dfsg * Refreshing patches * Raising copyright years -- Pierre Gruet Mon, 26 Jun 2023 14:21:31 +0200 jalview (2.11.2.5+dfsg-3) unstable; urgency=medium * Team upload * Update log4j dependency to use log4j2 (Closes: #1030414) -- tony mancill Sat, 04 Feb 2023 15:21:07 -0800 jalview (2.11.2.5+dfsg-2) unstable; urgency=medium * Depending on biojava6 instead of biojava5 * Raising Standards version to 4.6.2 (no change) * Set upstream metadata fields: Repository-Browse. -- Pierre Gruet Thu, 12 Jan 2023 21:04:14 +0100 jalview (2.11.2.5+dfsg-1) unstable; urgency=medium * New upstream version 2.11.2.5+dfsg * Honouring Build-Depends-Indep * Adding a Lintian override for another file with very-long-lines -- Pierre Gruet Sat, 19 Nov 2022 00:18:28 +0100 jalview (2.11.2.4+dfsg-1) unstable; urgency=medium * New upstream version 2.11.2.4+dfsg * Refreshing patches * Updating d/watch for new site layout -- Pierre Gruet Fri, 26 Aug 2022 21:11:54 +0200 jalview (2.11.2.3+dfsg-1) unstable; urgency=medium * New upstream version 2.11.2.3+dfsg * Refreshing patches * Patching out more portions of build.gradle * Deactivating the loading of flatlaf Look and Feel * Adding a Lintian override for very-long-lines in html files -- Pierre Gruet Tue, 12 Jul 2022 21:46:57 +0200 jalview (2.11.2.2+dfsg2-1) unstable; urgency=medium * New upstream version 2.11.2.2+dfsg2 * Refreshing patches * Updating the list of files to exclude * Refreshing d/copyright * Raising Standards version to 4.6.1 (no change) * Changing incorrect JSON invocations using former patch * Moving new upstream definitions and tasks in build.gradle out of the way * Build-depending on libmockito-java for the tests * Putting jars needed for the build and tests in a subdir of the source dir, to ensure only the needed jars are in the classpath during the build * Reducing and sorting the classpath of the built jar * Skipping the JalviewLite class and its reserve dependencies as applets will not be supported in openjdk-17 (Closes: #1011184) * Changing the directory in which the .build_properties file is created * Removing now useless versioned build-dependency on libapache-mime4j-java * Providing a MetaInfo file -- Pierre Gruet Sun, 22 May 2022 22:46:51 +0200 jalview (2.11.1.4+dfsg-3) unstable; urgency=medium * Depending on libbiojava5-java instead of libbiojava4-java -- Pierre Gruet Tue, 22 Feb 2022 17:40:38 +0100 jalview (2.11.1.4+dfsg-2) unstable; urgency=medium * Correcting the BS package in dependency jmol, adding versioned dependency -- Pierre Gruet Tue, 12 Oct 2021 09:29:07 +0200 jalview (2.11.1.4+dfsg-1) unstable; urgency=medium * New upstream version 2.11.1.4+dfsg * Refreshing patches * Now building with gradle (as upstream) and maven_repo_helper * Raising Standards version to 4.6.0 (no change) * Adding French translation of debconf templates, thanks to Jean-Pierre Giraud! (Closes: #985567, #994482) * Adding Spanish translation of debconf templates, thanks to Camaleón! (Closes: #988491) * Updating the Dutch translation of debconf templates, thanks to Frans Spiesschaert! (Closes: #994148) * Using the icon now provided by upstream for the application * Exiting autopkgtest if one sub-test fails -- Pierre Gruet Sat, 18 Sep 2021 11:28:01 +0200 jalview (2.11.1.3+dfsg2-5) unstable; urgency=medium * Making the build reproducible thanks to Chris Lamb's patch about a timestamp issue (Closes: #985448) -- Pierre Gruet Thu, 18 Mar 2021 21:59:31 +0100 jalview (2.11.1.3+dfsg2-4) unstable; urgency=medium * Building the .build_properties file using dpkg-parsechangelog -STimestamp * Updating the description in d/control and the d/templates file for debconf after debian-l10n-english review (Closes: #983580) * Adding translations of debconf questionnaire in - Brazilian Portuguese, thanks to Tássia Camoes Araujo (Closes: 984963), - Dutch, thanks to Frans Spiesschaert (Closes:984822), - Galician, thanks to Pablo, - German, thanks to Helge Kreutzmann (Closes:983579), - Portuguese, thanks to Américo Monteiro (Closes:984935) -- Pierre Gruet Thu, 11 Mar 2021 21:49:35 +0100 jalview (2.11.1.3+dfsg2-3) unstable; urgency=medium * Writing the .build_properties file needed in the jar * Updating the jalview wrapper to allow for either clicking on the icon, dropping a file onto it or right-clicking on a file in the file manager * Adding maintainer scripts and debconf questions to configure privacy options linked to automatic websites pings * Changing the date format in the .build_properties file * Packaging the example file so that it is not downloaded from the Internet at each startup -- Pierre Gruet Mon, 22 Feb 2021 17:54:06 +0100 jalview (2.11.1.3+dfsg2-2) unstable; urgency=high * Adding a memory limitation in the autopkgtest * Fixing a typo in d/tests/run-unit-test * Removing now useless d/TODO and d/dirs files -- Pierre Gruet Sun, 07 Feb 2021 22:06:13 +0100 jalview (2.11.1.3+dfsg2-1) unstable; urgency=medium [ Pierre Gruet ] * New upstream version (Closes: #849025) * New uploader (Closes: #897294) * Using version 4 in d/watch to remove files * Using secure URI in d/watch * Switching from cdbs to dh * Depending on debhelper-compat 13 * Making the build with Maven instead of upstream's gradle * Removing call to classgraph, not needed for a Debian run * Updating build-dependencies list and d/jalview.classpath * Modifying the jar launcher by setting properly the jar manifest * Updating Vcs-* and Homepage fields in d/control * Refreshing d/copyright * Bump Standards version to 4.5.1: - Providing a FreeDesktop entry instead of former menu entry - Rules-Requires-Root: no - Using the https form of the copyright-format URL * Updating manpage * Deactivating Google Analytics, using a non-packaged and improperly licensed software * Adding Mime types in d/jalview.desktop and d/jalview-mime.xml * Adding autopkgtests * Integrating the patch of upstream to control the way the web services are launched [ Steffen Moeller ] * Reintroduced debian/upstream/edam file * Created debian/upstream/metadata - references to papers - references to registries * Added prior forgotten PMID in metadata * d/u/metadata: syntax fixed(?) and URLs added * Added ref to conda, RRID->SciCrunch [ Andreas Tille ] * d/rules: enforce LC_ALL=C.UTF-8 to cope with UTF-8 characters -- Pierre Gruet Sat, 06 Feb 2021 23:04:36 +0100 jalview (2.7.dfsg-5) unstable; urgency=medium * Team upload. * Add debian/jalview.classpath and replace usage of JH_CLASSPATH_ARGS to avoid unwanted dependency on openjdk-7-jdk. (Closes: #814177) * Declare compliance with Debian Policy 3.9.7. * Vcs: Use cgit and https. * Fix Lintian warning dep5-copyright-license-name-not-unique. -- Markus Koschany Fri, 08 Apr 2016 23:36:00 +0200 jalview (2.7.dfsg-4) unstable; urgency=low * Team upload * Fixed a compilation error with Java 8 (Closes: #750746) * Removed the unused build dependencies on libgnujaf-java, libgnumail-java, libxalan2-java and libxerces2-java * Updated Standards-Version to 3.9.5 (no changes) * Moved the package to Git * Switch to debhelper level 9 * debian/copyright: Fixed a license short name -- Emmanuel Bourg Fri, 12 Sep 2014 14:56:20 +0200 jalview (2.7.dfsg-3) unstable; urgency=low * Team upload. [Emmanuel Bourg] * Added a patch to compile with Apache Mime4J 0.7.2 * debian/control: - Updated Standards-Version to 3.9.4 (no changes) - Runtime dependency on default-jre | java6-runtime (Closes: #727791) - Removed the duplicate build dependencies on javahelp2 and libaxis-java - Fixed a typo in the package description (Closes: #676623) * debian/copyright: Updated the Format URI * Updated debian/watch to catch the new releases * debian/rules: - Added a clean target to allow rebuilds - Added jsearch-indexer.jar to the classpath to fix the buildindices target [Niels Thykier] * Move package under under the Debian Java team with permission from Vincent. -- Emmanuel Bourg Mon, 04 Nov 2013 14:37:52 +0100 jalview (2.7.dfsg-2) unstable; urgency=low * Upload to unstable now that jmol is there too * Pull patches/newer-jmol-api.diff from upstream's git repository to make jalview work with jmol currently in unstable. -- Vincent Fourmond Mon, 07 Nov 2011 20:47:14 +0100 jalview (2.7.dfsg-1) experimental; urgency=low * Initial release (Closes: #507436) * Adding a debian/new-upstream script to repackage the original tarball, getting rid of the bundled precompiled JAR files (I love JAR files) * Using dh 7 and javahelper * Using jh_build for building * Uploading to experimental as it works only with the version of jmol in experimental -- Vincent Fourmond Wed, 19 Oct 2011 20:19:46 +0200