Source: jellyfish Maintainer: Debian Med Packaging Team Uploaders: Shaun Jackman , Andreas Tille , Michael R. Crusoe Section: science Priority: optional Build-Depends: debhelper (>= 11~), d-shlibs, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, python-all-dev, dh-python, perl, chrpath Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/jellyfish Vcs-Git: https://salsa.debian.org/med-team/jellyfish.git Homepage: http://www.cbcb.umd.edu/software/jellyfish/ Package: jellyfish Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, libjellyfish-2.0-2 (= ${binary:Version}) Description: count k-mers in DNA sequences JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. . JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. Package: libjellyfish-2.0-2 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Description: count k-mers in DNA sequences (dynamic library of jellyfish) JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. . JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. . This package contains the dynamic library the main executable of jellyfish is linked to. Package: libjellyfish-2.0-dev Architecture: any Multi-Arch: same Section: libdevel Depends: ${misc:Depends}, libjellyfish-2.0-2 (= ${binary:Version}) Description: count k-mers in DNA sequences (development files of jellyfish) JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. . JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. . This package contains the development files (static library and header files) #Package: python3-dna-jellyfish #Architecture: any #Section: python #Depends: ${python3:Depends}, # ${misc:Depends}, # ${shlibs:Depends} #Description: count k-mers in DNA sequences (Python bindings of jellyfish) # JELLYFISH is a tool for fast, memory-efficient counting of k-mers in # DNA. A k-mer is a substring of length k, and counting the occurrences # of all such substrings is a central step in many analyses of DNA # sequence. JELLYFISH can count k-mers using an order of magnitude less # memory and an order of magnitude faster than other k-mer counting # packages by using an efficient encoding of a hash table and by # exploiting the "compare-and-swap" CPU instruction to increase # parallelism. # . # JELLYFISH is a command-line program that reads FASTA and multi-FASTA # files containing DNA sequences. It outputs its k-mer counts in an # binary format, which can be translated into a human-readable text # format using the "jellyfish dump" command. # . # This package contains the Python bindings of jellyfish. Package: libjellyfish-perl Architecture: any Multi-Arch: same Section: perl Depends: ${perl:Depends}, ${misc:Depends}, ${shlibs:Depends} Description: count k-mers in DNA sequences (Perl bindings of jellyfish) JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. . JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. . This package contains the Perl bindings of jellyfish. Package: jellyfish-examples Architecture: any Depends: jellyfish, ${shlibs:Depends}, ${misc:Depends} Description: count k-mers in DNA sequences (examples for testing) JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. . JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. . This package contains examples to test the package