#!/usr/bin/make -f include /usr/share/dpkg/default.mk build3vers := $(shell py3versions -sv) export DEB_BUILD_MAINT_OPTIONS=hardening=+all export DH_OPTIONS export PKG_CONFIG_LIBDIR=${CURDIR} export PKG_CONFIG_ALLOW_SYSTEM_LIBS=true export PKG_CONFIG_SYSROOT_DIR=${CURDIR}/debian/tmp/ export PERL_MM_OPT=INSTALLDIRS=vendor export PYBUILD_BUILD_ARGS=build_ext --rpath "${CURDIR}/debian/tmp/usr/lib/${DEB_HOST_MULTIARCH}" export DEB_LDFLAGS_MAINT_APPEND = -lpthread %: dh $@ # --with python3 override_dh_auto_install: dh_auto_install -- install-data override_dh_installexamples: dh_installexamples sed '/SRCDIR=/d' debian/jellyfish-examples/usr/share/doc/jellyfish-examples/examples/compat.sh* sed '/BUILDDIR=/d' debian/jellyfish-examples/usr/share/doc/jellyfish-examples/examples/compat.sh* rm -f debian/jellyfish-examples/usr/share/doc/jellyfish-examples/examples/swig* override_dh_install: # dh_install -X*.a -X*.la -Xpkgconfig # dh_install -ppython3-dna-jellyfish # pybuild -d swig/python --name dna-jellyfish ## pybuild -d swig/python --name dna-jellyfish --disable test/python3 ## pybuild -d swig/python --name dna-jellyfish --test --test-args "${CURDIR}/swig/python/ test_string_mers.py" ## pybuild -d swig/python --name dna-jellyfish --test --test-args "${CURDIR}/swig/python/ test_hash_counter.py" # chrpath --delete debian/*/usr/lib/python*/dist-packages/_dna_jellyfish*.so dh_auto_configure --sourcedirectory=swig/perl5 ## dh_auto_configure --sourcedirectory=swig/python dh_auto_build --sourcedirectory=swig/perl5 dh_auto_install --sourcedirectory=swig/perl5 chrpath --delete debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "debian/tmp/usr/include/$(DEB_SOURCE)*/$(DEB_SOURCE)/*.hpp" usr/include/$(DEB_SOURCE) \ --movedev "debian/tmp/usr/include/$(DEB_SOURCE)*/$(DEB_SOURCE)/*.h" usr/include/$(DEB_SOURCE) \ debian/tmp/usr/lib/*/lib$(DEB_SOURCE)-*.so sed -i "/dependency_libs/ s/'.*'/''/" ./debian/libjellyfish-2.0-dev/usr/lib/${DEB_HOST_MULTIARCH}/*.la override_dh_auto_configure: dh_auto_configure -- --enable-swig --enable-perl-binding # --enable-python-binding override_dh_clean: dh_clean if [ -d debian/tmp_save_tests ] ; then \ mv debian/tmp_save_tests/* tests ; \ rmdir debian/tmp_save_tests ; \ fi rm -f tests/compat.sh rm -f swig/python/jellyfish* # swig/python/dna_jellyfish.py override_dh_auto_build: mkdir -p debian/tmp_save_tests cp -a tests/* debian/tmp_save_tests dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam # cd doc ; RUBYLIB=$PWD PATH=$PATH:../bin make clean all ; cd .. # broken # jellyfish contains a *really* big test which should *not* run on autobuilders # if you have a *really* large machine you can try to activate this test by # uncommenting the following. #override_dh_auto_test: # BIG=1 dh_auto_test