Source: jmodeltest
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
 Andreas Tille <tille@debian.org>,
Section: science
Build-Depends:
 debhelper-compat (= 13),
 dh-sequence-cruft,
 alter-sequence-alignment,
 ant,
 default-jdk,
 javahelper,
 libfreemarker-java,
 libjcommon-java,
 libjfreechart-java,
 libmpj-java,
 libpal-java,
 prottest,
 texlive-fonts-recommended,
 texlive-latex-base,
 texlive-latex-extra,
 texlive-latex-recommended,
Standards-Version: 4.7.4
Vcs-Browser: https://salsa.debian.org/med-team/jmodeltest
Vcs-Git: https://salsa.debian.org/med-team/jmodeltest.git
Homepage: https://github.com//ddarriba/jmodeltest2

Package: jmodeltest
Architecture: all
Depends:
 java-wrappers,
 phyml,
 ${java:Depends},
 ${misc:Depends},
Description: HPC selection of models of nucleotide substitution
 jModelTest is a tool to carry out statistical selection of best-fit
 models of nucleotide substitution. It implements five different model
 selection strategies: hierarchical and dynamical likelihood ratio tests
 (hLRT and dLRT), Akaike and Bayesian information criteria (AIC and BIC),
 and a decision theory method (DT). It also provides estimates of model
 selection uncertainty, parameter importances and model-averaged
 parameter estimates, including model-averaged tree topologies.
 jModelTest 2 includes High Performance Computing (HPC) capabilities and
 additional features like new strategies for tree optimization, model-
 averaged phylogenetic trees (both topology and branch length), heuristic
 filtering and automatic logging of user activity.