Source: kleborate
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
 Andreas Tille <tille@debian.org>,
 Étienne Mollier <emollier@debian.org>,
Section: science
Build-Depends:
 debhelper-compat (= 13),
 dh-sequence-python3,
 kaptive <!nocheck>,
 mash <!nocheck>,
 ncbi-blast+ <!nocheck>,
 python3,
 python3-setuptools,
Standards-Version: 4.7.3
Vcs-Browser: https://salsa.debian.org/med-team/kleborate
Vcs-Git: https://salsa.debian.org/med-team/kleborate.git
Homepage: https://github.com/katholt/Kleborate

Package: kleborate
Architecture: any
Depends:
 kaptive,
 kaptive-data,
 mash,
 ncbi-blast+,
 ${misc:Depends},
 ${python3:Depends},
Recommends:
 python3-biopython,
Description: tool to screen Klebsiella genome assemblies
 Kleborate is a tool to screen Klebsiella genome assemblies for:
 .
  * MLST sequence type
  * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
  * ICEKp associated virulence loci: yersiniabactin (ybt),
    colibactin (clb)
  * virulence plasmid associated loci: salmochelin (iro), aerobactin
    (iuc), hypermucoidy (rmpA, rmpA2)
  * antimicrobial resistance genes, including quinolone resistance SNPs
    and colistin resistance truncations
  * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
    and Kaptive

Package: kleborate-examples
Architecture: all
Depends:
 ${misc:Depends},
Recommends:
 kleborate,
Multi-Arch: foreign
Description: tool to screen Klebsiella genome assemblies (example data)
 Kleborate is a tool to screen Klebsiella genome assemblies for:
 .
  * MLST sequence type
  * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
  * ICEKp associated virulence loci: yersiniabactin (ybt),
    colibactin (clb)
  * virulence plasmid associated loci: salmochelin (iro), aerobactin
    (iuc), hypermucoidy (rmpA, rmpA2)
  * antimicrobial resistance genes, including quinolone resistance SNPs
    and colistin resistance truncations
  * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
    and Kaptive
 .
 This package provides example data end tests that are used in autopkgtest.