Source: kma Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: science Priority: optional Build-Depends: debhelper-compat (= 13), zlib1g-dev Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/kma Vcs-Git: https://salsa.debian.org/med-team/kma.git Homepage: https://bitbucket.org/genomicepidemiology/kma Rules-Requires-Root: no Package: kma Architecture: any-amd64 arm64 mips64el ppc64el s390x alpha ia64 ppc64 riscv64 sparc64 Depends: ${shlibs:Depends}, ${misc:Depends} Description: mapping genomic sequences to raw reads directly against redundant databases KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. KMA is particularly good at aligning high quality reads against highly redundant databases, where unique matches often does not exist. It works for long low quality reads as well, such as those from Nanopore. Non- unique matches are resolved using the "ConClave" sorting scheme, and a consensus sequence are outputtet in addition to other common attributes.