Source: lsd2
Section: science
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Build-Depends: debhelper-compat (= 14),
               cmake
Standards-Version: 4.7.4
Vcs-Browser: https://salsa.debian.org/med-team/lsd2
Vcs-Git: https://salsa.debian.org/med-team/lsd2.git
Homepage: https://github.com/tothuhien/lsd2

Package: lsd2
Architecture: any
Depends: ${shlibs:Depends},
         ${misc:Depends}
Description: least-squares method to estimate rates and dates from phylogenies
 LSD2 (Least-Squares Dating) infers substitution rates and node dates
 on a fixed phylogenetic tree topology using least-squares criteria.
 .
 Features include:
  * rooted and unrooted input trees, with or without outgroups;
  * flexible tip/internal-node date constraints (fixed dates, bounds,
    or intervals), including trees with only partially known dates;
  * multiple substitution rates via user-defined tree partitions;
  * confidence interval estimation via parametric bootstrap;
  * detection and removal of outlier tips/dates.
 .
 LSD2 is also integrated as a library into IQ-TREE for divergence-time
 estimation.