libbpp-phyl (2.4.1-11) unstable; urgency=medium * Since every GCC version bump ends up in a bug caused by the need to update symbols files we stop providing symbols for this library Closes: #1075148 * lintian-override for no-symbols-control-file * Standards-Version: 4.7.0 (routine-update) -- Andreas Tille Fri, 05 Jul 2024 07:40:57 +0200 libbpp-phyl (2.4.1-10) unstable; urgency=medium * Team upload. * d/patches/unforce-cxxflags.patch: update to allow combination of upstream's and dpkg-buildflags compile flags. * d/source/lintian-overrides: silence false-positive from the t64 transition * d/patches/spelling: new patch to fix typos. -- Michael R. Crusoe Mon, 25 Mar 2024 16:12:25 +0100 libbpp-phyl (2.4.1-9.1) unstable; urgency=medium * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1062234 -- Lukas Märdian Thu, 29 Feb 2024 15:12:22 +0000 libbpp-phyl (2.4.1-9) unstable; urgency=medium * Team upload. * d/*.symbols*: mark some gcc specific symbols as optional. (Closes: #1037718) * Standards-Version: 4.6.2 (routine-update) -- Étienne Mollier Sun, 13 Aug 2023 12:13:20 +0200 libbpp-phyl (2.4.1-8) unstable; urgency=medium * Fix watch file * Update symbols -- Andreas Tille Wed, 30 Nov 2022 18:45:56 +0100 libbpp-phyl (2.4.1-7) unstable; urgency=medium * Team upload. * d/libbpp-phyl12.symbols.amd64: mark compiler specific symbols optional. (Closes: #1012968) * Standards-Version: 4.6.1 (routine-update) -- Étienne Mollier Sat, 09 Jul 2022 20:52:45 +0200 libbpp-phyl (2.4.1-6) unstable; urgency=medium * Fix symbols again Closes: #997444 -- Andreas Tille Mon, 01 Nov 2021 14:08:45 +0100 libbpp-phyl (2.4.1-5) unstable; urgency=medium * Fix watchfile to detect new versions on github (routine-update) * Standards-Version: 4.6.0 (routine-update) * Update symbols to gcc 11 Closes: #984089 -- Andreas Tille Wed, 29 Sep 2021 20:23:09 +0200 libbpp-phyl (2.4.1-4) unstable; urgency=medium * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Refer to specific version of license GPL-2+. * Fix day-of-week for changelog entry 2.0.3-1. * Update symbols for gcc-10 Closes: #957425 -- Andreas Tille Thu, 23 Jul 2020 11:44:02 +0200 libbpp-phyl (2.4.1-3) unstable; urgency=medium [ Julien Dutheil ] * Remove test that causes random failures [ Andreas Tille ] * Adapt symbols to new gcc version Closes: #925732 * debhelper-compat 12 * Standards-Version: 4.4.0 -- Andreas Tille Tue, 20 Aug 2019 18:13:57 +0200 libbpp-phyl (2.4.1-2) unstable; urgency=medium [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. [ Michael R. Crusoe ] * libbpp-phyl-dev: Multi-Arch: same & add missing ${devlibs:Depends} * Remove trailing whitespace in debian/copyright * Standards-Version: 4.3.0 [ Andreas Tille ] * Adapt symbols to new gcc version Closes: #923457 * More sensible way to provide symbols amd64 only -- Andreas Tille Fri, 01 Mar 2019 15:52:37 +0100 libbpp-phyl (2.4.1-1) unstable; urgency=medium [ Julien Dutheil ] * New upstream update. Closes: #906478 [ Andreas Tille ] * Standards-Version: 4.2.0 -- Julien Dutheil Sun, 19 Aug 2018 21:36:23 +0200 libbpp-phyl (2.4.0-2) unstable; urgency=medium [ Julien Dutheil ] * Increases likelihood test tolerance. [ Andreas Tille ] * Standards-Version: 4.1.4 -- Julien Dutheil Mon, 30 Apr 2018 16:58:46 +0200 libbpp-phyl (2.4.0-1) unstable; urgency=medium [ Julien Dutheil ] * New upstream update. * Reduced execution time of test_likelihood_nh Closes: #890136 * Added symbol list (only for amd64) [ Andreas Tille ] * Versioned Build-Depends: d-shlibs (>= 0.82) * d/rules: Drop unneeded override for d-shlibmove * Provide full license text of CeCILL license * Point Vcs fields to salsa.debian.org -- Julien Dutheil Fri, 06 Apr 2018 07:53:20 +0200 libbpp-phyl (2.3.2-2) unstable; urgency=medium * Fixed covariant return type on 32bits arch. Closes: #889953 -- Julien Dutheil Fri, 09 Feb 2018 09:10:11 +0200 libbpp-phyl (2.3.2-1) unstable; urgency=medium [ Julien Dutheil ] * Standards-Version: 4.1.2 [ Andreas Tille ] * cme fix dpkg-control * debhelper 11 -- Julien Dutheil Mon, 05 Feb 2018 20:59:41 +0200 libbpp-phyl (2.3.1-10) unstable; urgency=medium [ Julien Dutheil ] * Does not override debian cxx flags anymore. [ Andreas Tille ] * Rebuild with gcc-7 Closes: #871085 * Standards-Version: 4.0.1 * Fix d-shlibs override -- Andreas Tille Wed, 23 Aug 2017 23:32:26 +0200 libbpp-phyl (2.3.1-9) unstable; urgency=medium * Further increased time out limit for unit tests. Closes: 866365 -- Julien Dutheil Mon, 17 Jul 2017 09:24:23 +0200 libbpp-phyl (2.3.1-8) unstable; urgency=medium * another try to have test_likelihood_clock pass on mips architecture. -- Julien Dutheil Sun, 16 Jul 2017 10:43:18 +0200 libbpp-phyl (2.3.1-7) unstable; urgency=medium * Some tests redesign. Should hopefully make test_mapping more stable, and have test_likelihood_clock pass on mips architecture -- Julien Dutheil Sat, 15 Jul 2017 22:48:50 +0200 libbpp-phyl (2.3.1-6) unstable; urgency=medium [ Julien Dutheil ] * remove some deprecation warnings which might lead to timeouts in tests [ Andreas Tille ] * Remove postinst, postrm and prerm -- Andreas Tille Fri, 14 Jul 2017 14:20:59 +0200 libbpp-phyl (2.3.1-5) unstable; urgency=medium * Fix build time issues for remaining architectures Closes: #865552 -- Andreas Tille Tue, 27 Jun 2017 11:16:14 +0200 libbpp-phyl (2.3.1-4) unstable; urgency=medium * Relax timeout for tests. Dealswith: #865552 * d-shlibs (>= 0.80) contains needed override -- Andreas Tille Mon, 26 Jun 2017 12:39:58 +0200 libbpp-phyl (2.3.1-3) unstable; urgency=medium * cmake files belong to /usr/lib/$(DEB_HOST_MULTIARCH) * debhelper 10 * Standards-Version: 4.0.0 (no changes needed) -- Andreas Tille Fri, 23 Jun 2017 09:10:34 +0200 libbpp-phyl (2.3.1-2) unstable; urgency=medium * Make sure cmake files will be installed also on i386 -- Andreas Tille Thu, 22 Jun 2017 08:03:24 +0200 libbpp-phyl (2.3.1-1) unstable; urgency=medium * New upstream version * d/watch: point to github -- Andreas Tille Tue, 13 Jun 2017 16:39:48 +0200 libbpp-phyl (2.2.0-1) unstable; urgency=medium * New upstream version * Moved packaging to Git * Better description * Team maintenance in Debian Med team * cme fix dpkg-control * Source package section: science * Add watch file * debhelper 9 * DEP5 * short dh rules file using d-shlibs * Library transition Closes: #791094 -- Andreas Tille Thu, 21 Apr 2016 14:16:41 +0200 libbpp-phyl (2.1.0-1) unstable; urgency=low * New RateDistribution classes * New models for protein sequences (COaLA) * Support for gaps in parsimony score * Improved and extended support for BppO * Several bugs fixed and warnings removed -- Julien Dutheil Thu, 07 Mar 2013 15:58:00 +0100 libbpp-phyl (2.0.3-1) unstable; urgency=low * Reorganized model hierarchy * New pairwise models * Several bugs fixed -- Julien Dutheil Sat, 09 Feb 2013 16:00:00 +0100 libbpp-phyl (2.0.2-1) unstable; urgency=low * RFP: Bio++ -- The Bio++ bioinformatics libraries. (Closes: #616373). * Packages are now non-native. * Exact substitution mapping with detailled counts. * Backup system for ML estimation. -- Julien Dutheil Thu, 09 Jun 2011 11:00:00 +0100 libbpp-phyl (2.0.1) unstable; urgency=low * Fixed bug #27 * Improved tree drawing algorithms. -- Julien Dutheil Mon, 28 Feb 2011 09:00:00 +0100 libbpp-phyl (2.0.0) unstable; urgency=low * Better mixed models * Extended substitution mapping framework * More bug fixed, notably in simulation procedures * Topology comparison tools (ELW) * Improved graphic classes -- Julien Dutheil Mon, 07 Feb 2011 09:00:00 +0100 libbpp-phyl (1.9.0) unstable; urgency=low * Several bugs fixed and improvements, compilation with -Weffc++ * Codon models * Improved non-homogeneous classes * Improved tree drawing classes -- Julien Dutheil Thu, 25 Mar 2010 13:47:24 +0100 libbpp-phyl (1.8.0) unstable; urgency=low * Several buf fixed and improvements. * New support for Nexus tree files. * New syntax for model description using keyvals. -- Julien Dutheil Wed, 10 Jun 2009 11:28:58 +0100 libbpp-phyl (1.7.0) unstable; urgency=low * Several bug fixed and improvements... -- Julien Dutheil Thu, 11 Dec 2008 12:21:37 +0100 libbpp-phyl (1.6.0) unstable; urgency=low * New +F protein models + bugs fixed. -- Julien Dutheil Wed, 24 Sep 2008 14:07:26 +0200 libbpp-phyl (1.5.1) unstable; urgency=low * Initial Release. -- Julien Dutheil Mon, 21 Jul 2008 15:17:26 +0200