Source: libedlib Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: science Priority: optional Build-Depends: debhelper (>= 12~), cmake, dh-python, d-shlibs, rename, cython3, python3-all-dev, python3-setuptools Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/libedlib Vcs-Git: https://salsa.debian.org/med-team/libedlib.git Homepage: https://github.com/Martinsos/edlib Package: libedlib0 Architecture: any Section: libs Depends: ${misc:Depends}, ${shlibs:Depends} Description: library for sequence alignment using edit distance A lightweight and super fast C/C++ library for sequence alignment using edit distance. . Calculating edit distance of two strings is as simple as: . edlibAlign("hello", 5, "world!", 6, edlibDefaultAlignConfig()).editDistance; Features . * Calculates edit distance (Levehnstein distance). * It can find optimal alignment path (instructions how to transform first sequence into the second sequence). * It can find just the start and/or end locations of alignment path - can be useful when speed is more important than having exact alignment path. * Supports multiple alignment methods: global(NW), prefix(SHW) and infix(HW), each of them useful for different scenarios. * You can extend character equality definition, enabling you to e.g. have wildcard characters, to have case insensitive alignment or to work with degenerate nucleotides. * It can easily handle small or very large sequences, even when finding alignment path, while consuming very little memory. * Super fast thanks to Myers's bit-vector algorithm. . This package contains the shared library. Package: libedlib-dev Architecture: any Section: libdevel Depends: ${misc:Depends}, ${shlibs:Depends}, libedlib0 (= ${binary:Version}) Description: library for sequence alignment using edit distance (devel) A lightweight and super fast C/C++ library for sequence alignment using edit distance. . Calculating edit distance of two strings is as simple as: . edlibAlign("hello", 5, "world!", 6, edlibDefaultAlignConfig()).editDistance; Features . * Calculates edit distance (Levehnstein distance). * It can find optimal alignment path (instructions how to transform first sequence into the second sequence). * It can find just the start and/or end locations of alignment path - can be useful when speed is more important than having exact alignment path. * Supports multiple alignment methods: global(NW), prefix(SHW) and infix(HW), each of them useful for different scenarios. * You can extend character equality definition, enabling you to e.g. have wildcard characters, to have case insensitive alignment or to work with degenerate nucleotides. * It can easily handle small or very large sequences, even when finding alignment path, while consuming very little memory. * Super fast thanks to Myers's bit-vector algorithm. . This package contains the static library and the header files. Package: edlib-aligner Architecture: any Depends: ${misc:Depends}, ${shlibs:Depends}, libedlib0 (= ${binary:Version}) Description: edlib sequence alignment tool using edit distance Edlib is a lightweight and super fast C/C++ library for sequence alignment using edit distance. This package provides an aligner using this library. . Features of libedlib . * Calculates edit distance (Levehnstein distance). * It can find optimal alignment path (instructions how to transform first sequence into the second sequence). * It can find just the start and/or end locations of alignment path - can be useful when speed is more important than having exact alignment path. * Supports multiple alignment methods: global(NW), prefix(SHW) and infix(HW), each of them useful for different scenarios. * You can extend character equality definition, enabling you to e.g. have wildcard characters, to have case insensitive alignment or to work with degenerate nucleotides. * It can easily handle small or very large sequences, even when finding alignment path, while consuming very little memory. * Super fast thanks to Myers's bit-vector algorithm. Package: python3-edlib Architecture: any Section: python Depends: ${misc:Depends}, ${shlibs:Depends}, ${python3:Depends} Description: library for sequence alignment using edit distance (Python3 module) A lightweight and super fast C/C++ library for sequence alignment using edit distance. . Calculating edit distance of two strings is as simple as: . edlibAlign("hello", 5, "world!", 6, edlibDefaultAlignConfig()).editDistance; Features . * Calculates edit distance (Levehnstein distance). * It can find optimal alignment path (instructions how to transform first sequence into the second sequence). * It can find just the start and/or end locations of alignment path - can be useful when speed is more important than having exact alignment path. * Supports multiple alignment methods: global(NW), prefix(SHW) and infix(HW), each of them useful for different scenarios. * You can extend character equality definition, enabling you to e.g. have wildcard characters, to have case insensitive alignment or to work with degenerate nucleotides. * It can easily handle small or very large sequences, even when finding alignment path, while consuming very little memory. * Super fast thanks to Myers's bit-vector algorithm. . This package contains the Python3 module.