Source: libfastahack Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Section: science Priority: optional Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/libfastahack Vcs-Git: https://salsa.debian.org/med-team/libfastahack.git Homepage: https://github.com/ekg/fastahack Rules-Requires-Root: no Package: libfastahack0 Architecture: any Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Description: library for indexing and sequence extraction from FASTA files (lib) fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use. . Features: * FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided) . Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence. . This package contains the dynamic library. Package: libfastahack-dev Architecture: any Section: libdevel Depends: libfastahack0 (= ${binary:Version}), ${misc:Depends} Description: library for indexing and sequence extraction from FASTA files (devel) fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use. . Features: * FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided) . Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence. . This is the development package containing the statically linked library and the header files. Package: fastahack Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Breaks: libfastahack0 (<< 1.0.0+dfsg-4) Replaces: libfastahack0 (<< 1.0.0+dfsg-4) Description: utility for indexing and sequence extraction from FASTA files fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use. . Features: * FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided) . Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.