Source: libseqlib
Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
 Andreas Tille <tille@debian.org>,
 Étienne Mollier <emollier@debian.org>,
Section: science
Build-Depends:
 debhelper-compat (= 14),
 d-shlibs,
 libbwa-dev,
 libbz2-dev,
 libcurl4-gnutls-dev | libcurl4-dev,
 libfml-dev,
 libhts-dev,
 libjsoncpp-dev,
 libssw-dev,
 pkg-kde-tools,
 pkgconf,
 zlib1g-dev,
Vcs-Browser: https://salsa.debian.org/med-team/libseqlib
Vcs-Git: https://salsa.debian.org/med-team/libseqlib.git
Homepage: https://github.com/walaj/SeqLib

Package: libseqlib2
Architecture: any
Multi-Arch: same
Section: libs
Depends:
 ${misc:Depends},
 ${shlibs:Depends},
Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data
 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.

Package: libseqlib-dev
Architecture: any
Multi-Arch: same
Section: libdevel
Depends:
 libbwa-dev,
 libseqlib2 (= ${binary:Version}),
 ${devlibs:Depends},
 ${misc:Depends},
Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.
 .
 This package contains the header files and static library.