Source: libtfbs-perl
Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
 Steffen Moeller <moeller@debian.org>,
 Charles Plessy <plessy@debian.org>,
 Andreas Tille <tille@debian.org>,
Section: perl
Testsuite: autopkgtest-pkg-perl
Build-Depends:
 bioperl,
 debhelper-compat (= 14),
 dh-sequence-pdl,
 libcrypt-dev,
 libdbi-perl <!nocheck>,
 libwww-perl <!nocheck>,
 pdl (>= 1:2.016),
 perl-xs-dev,
 perl:native,
Vcs-Browser: https://salsa.debian.org/med-team/libtfbs-perl
Vcs-Git: https://salsa.debian.org/med-team/libtfbs-perl.git
Homepage: http://tfbs.genereg.net

Package: libtfbs-perl
Architecture: any
Depends:
 ${misc:Depends},
 ${pdl:Depends},
 ${perl:Depends},
 ${shlibs:Depends},
 bioperl,
 libdbi-perl,
 libwww-perl,
Recommends:
 libgd-perl,
Description: scanning DNA sequence with a position weight matrix
 The TFBS perl modules comprise a set of routines to interact with the
 Transfac and Jaspar databases that describe a special family of proteins,
 the transcription factors. These bind to genomic DNA to initiate (or
 prevent) the readout of a gene.  Once multiple binding sites are known
 for a transcription factor, these are gathered in a single file and are
 aligned in order to find position-specific characteristica that might
 be used to predict such binding events in novel DNA sequences.
 .
 If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
 TFBS: Computational framework for transcription factor binding site analysis.
 Bioinformatics 18:1135-1136".
 .
 Note: the TFBS perl module is no longer under active development.  All the
 functionality can be found in the TFBSTools Bioconductor package; users are
 highly encouraged to switch.  <http://bioconductor.org/packages/TFBSTools/>