Source: mapdamage
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
               python3,
               dh-python,
               python3-setuptools,
               python3-pysam <!nocheck>,
               seqtk <!nocheck>,
               r-base-core <!nocheck>,
               r-cran-gam <!nocheck>,
               r-cran-ggplot2 <!nocheck>,
               r-cran-inline <!nocheck>
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/mapdamage
Vcs-Git: https://salsa.debian.org/med-team/mapdamage.git
Homepage: https://ginolhac.github.io/mapDamage/
Rules-Requires-Root: no

Package: mapdamage
Architecture: all
Depends: ${python3:Depends},
         ${misc:Depends},
         r-base-core,
         r-cran-gam,
         r-cran-ggplot2,
         r-cran-inline,
         seqtk,
         python3-pysam,
         r-cran-rcpp,
         r-cran-rcppgsl,
         libopenblas-dev | libblas-dev   | libatlas-base-dev | libblas.so,
         libopenblas-dev | liblapack-dev | libatlas-base-dev | liblapack.so
Description: tracking and quantifying damage patterns in ancient DNA sequences
 MapDamage is a computational framework written in Python and R, which
 tracks and quantifies DNA damage patterns among ancient DNA sequencing
 reads generated by Next-Generation Sequencing platforms.
 .
 MapDamage is developed at the Centre for GeoGenetics by the
 Orlando Group.