Source: mauve-aligner Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Section: science Priority: optional Build-Depends: debhelper-compat (= 13), javahelper, default-jdk, ant, ant-contrib, junit, libbiojava-java, libcommons-cli-java, libdbus-java, libzeus-jscl-java, libunixsocket-java, imagemagick Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/mauve-aligner Vcs-Git: https://salsa.debian.org/med-team/mauve-aligner.git Homepage: https://darlinglab.org/mauve/ Rules-Requires-Root: no Package: mauve-aligner Architecture: any Depends: ${java:Depends}, java-wrappers, ${misc:Depends}, libbiojava-java, progressivemauve Recommends: ${java:Recommends} Description: multiple genome alignment Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences. . Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours. . Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition. . Mauve is developed at the University of Wisconsin.