#!/usr/bin/make -f

DH_VERBOSE := 1
export LC_ALL=C.UTF-8
UVERSION=`head -n1 debian/changelog |cut -f1 -d- | cut -f2 -d'(' `

include /usr/share/dpkg/default.mk

%:
	dh $@ --with python3

override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
	cp -a testdata testdata_save
	./mCaller.py -p testdata/test_positions_A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
	./mCaller.py -p testdata/test_positions_m6A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
	./mCaller.py -p testdata/test_positions.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -t 4 --train -f testdata/masonread1.fastq
	rm -rf testdata
	mv testdata_save testdata
endif

override_dh_auto_clean:
	dh_auto_clean
	#rm -f model_NN_6_m6A.pkl testdata/masonread1.eventalign.diffs.6 testdata/masonread1.eventalign.diffs.6.train
	rm -rf __pycache__
	rm -f model_NN_6_m6A.pkl