Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: http://micans.org/mcl/src/
Files-Excluded: */*.1
                */doc/*.ps
                */*.html
                */Makefile.in
Upstream-Name: mcl

Files: *
Copyright: © 1999-2014 Stijn van Dongen <stijn@micans.org>
License: GPL-3+
Comment: Citation
 If you use MCL software in your scientific research, please cite it
 appropriately as you would cite a journal or a book. This includes papers
 published in regular or electronic journals, usage of MCL as a back-end to a
 database that is accessible via a web interface, or inclusion of MCL in a
 larger framework of software that is distributed for other people for
 scientific use.  Include one of the following citations:
 .
 Stijn van Dongen, Graph Clustering by Flow Simulation.
 PhD thesis, University of Utrecht, May 2000.
 ( http://www.library.uu.nl/digiarchief/dip/diss/1895620/inhoud.htm )
 .
 Stijn van Dongen. A cluster algorithm for graphs.  Technical Report
 INS-R0010, National Research Institute for Mathematics and Computer
 Science in the Netherlands, Amsterdam, May 2000.
 ( http://www.cwi.nl/ftp/CWIreports/INS/INS-R0010.ps.Z )
 .
 and proper attributions to mcl's home http://micans.org/mcl/
 and its author, Stijn van Dongen.
 The publications listed above can be retrieved from the preceding URL.
 .
 If you are using some wrapper around mcl such as the blast module or the
 tribe module, you are asked to act likewise.
 .
 For biological applications, it is appropriate to cite, additionally,
 the reference article for the first application of mcl to biological data:
 .
 Enright A.J., Van Dongen S., Ouzounis C.A.
 An efficient algorithm for large-scale detection of protein families,
 Nucleic Acids Research 30(7):1575-1584 (2002).

Files: src/alien/oxygen/src/mcxdeblast
Copyright: © 2002-2009 Stijn van Dongen,
           © 2004 Jason Stajich
License: GPL-3+

Files: util/rand.*
Copyright: © 2004-2009 Stijn van Dongen,
           © 2005 Jochen Voss
License: GPL-3+

Files: debian/*
Copyright: © 2001-2007 Joost van Baal <joostvb@debian.org>,
           © 2007-2013 Philipp Benner <philipp@debian.org>,
           © 2014-2017 Andreas Tille <tille@debian.org>
License: GPL-3+

License: GPL-3+
 This program is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 .
 This program is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 On Debian systems you can find the full text of the GNU General Public
 License version 3 at /usr/share/common-licenses/GPL-3.