Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: mdanalysis Upstream-Contact: O. Beckstein and team Source: https://github.com/MDAnalysis/mdanalysis Files-Excluded: package/doc/sphinx/source/_static/logos/* Files: * Copyright: 2005 Naveen Michaud-Agrawal, 2006-2020 MDAnalysis Core Developer Team and contributers License: GPL-2+ Files: CODE_OF_CONDUCT.md Copyright: 2005 Naveen Michaud-Agrawal, 2006-2020 MDAnalysis Core Developer Team and contributers License: CCA-3 Files: package/doc/sphinx/source/documentation_pages/analysis/hole2.rst Copyright: 2020 Lily Wang License: GPL-3 Files: package/doc/sphinx/source/documentation_pages/analysis/encore.rst Copyright: 2015-2017 Matteo Tiberti , Wouter Boomsma, Tone Bengtsen License: GPL-3 Files: package/MDAnalysis/analysis/align.py Copyright: 2010-2013 Oliver Beckstein, Joshua Adelman License: GPL-3 Files: package/MDAnalysis/analysis/bat.py Copyright: 2020 Soohaeng Yoo Willow and David Minh License: GPL-2+ Files: package/MDAnalysis/analysis/density.py Copyright: 2007-2011 Oliver Beckstein License: GPL-3+ Comment: based on code from Hop --- a framework to analyze solvation dynamics from MD simulations. . https://github.com/Becksteinlab/hop/blob/master/hop/density.py Files: package/MDAnalysis/analysis/diffusionmap.py Copyright: 2016 Eugen Hruska, John Detlefs License: GPL-2 Files: package/MDAnalysis/analysis/dihedrals.py Copyright: 2018 Henry Mull License: GPL-2 Files: package/MDAnalysis/analysis/gnm.py Copyright: 2011 Benjamin Hall License: GPL-2+ Files: package/MDAnalysis/analysis/helix_analysis.py Copyright: 2020 Lily Wang License: GPL-3 Files: package/MDAnalysis/analysis/msd.py Copyright: 2020 Hugo MacDermott-Opeskin License: GPL-2 Files: package/MDAnalysis/analysis/nuclinfo.py Copyright: 2011 Elizabeth Denning License: GPL-3 Files: package/MDAnalysis/analysis/pca.py Copyright: 2016 John Detlefs License: GPL-3 Files: package/MDAnalysis/analysis/polymer.py Copyright: 2015, 2018 Richard J. Gowers License: GPL-3 Files: package/MDAnalysis/analysis/psa.py Copyright: 2015 Sean Seyler License: GPL-3 Files: package/MDAnalysis/analysis/rms.py Copyright: 2016 Oliver Beckstein, David L. Dotson, John Detlefs License: GPL-2 Files: package/MDAnalysis/analysis/waterdynamics.py Copyright: 2014-2015 Alejandro Bernardin License: GPL-3 Files: package/MDAnalysis/analysis/hole2/*.py Copyright: 2020 Lily Wang License: GPL-3 Files: package/MDAnalysis/analysis/hbonds/hbond_autocorrel.py Copyright: 2014 Richard J. Gowers License: GPL-3 Files: package/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py Copyright: 2014 Richard J. Gowers License: GPL-3 Files: package/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py Copyright: 2017-2018 Zhiyi Wu License: GPL-3 Files: package/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py Copyright: 2019 Paul Smith License: GPL-3 Files: package/MDAnalysis/analysis/legacy/x3dna.py Copyright: 2013-2014 Elizabeth Denning License: GPL-2 Files: package/MDAnalysis/lib/correlations.py Copyright: 2020 Paul Smith & Mateusz Bieniek License: GPL-2 Files: package/MDAnalysis/coordinates/memory.py Copyright: 2016 Wouter Boomsma License: GPL-2 Files: package/MDAnalysis/lib/formats/src/xdrfile.c Copyright: 2009 Frans van Hoesel , 2009-2014, Erik Lindahl , 2009-2014, David van der Spoel License: BSD-2-clause Files: package/MDAnalysis/lib/formats/libdcd.pyx Copyright: 2006 Justin Gullingsrud, 2006-2017 MDAnalysis Core Developer Team License: GPL-2+ Files: package/MDAnalysis/transformations/* Copyright: 2006 Christoph Gohlke 2006-2017 MDAnalysis Core Developer Team License: GPL-2+ Files: package/MDAnalysis/lib/qcprot.* Copyright: 2005-2010 Douglas L. Theobald , 2009-2010 Pu Liu , 2011 Joshua L. Adelman , 2016 Robert R. Delgado, Cornell University and Arizona State University License: BSD-3-clause Comments: If you use this QCP rotation calculation method in a publication, please reference: . Douglas L. Theobald (2005) "Rapid calculation of RMSD using a quaternion-based characteristic polynomial." Acta Crystallographica A 61(4):478-480. . Pu Liu, Dmitris K. Agrafiotis, and Douglas L. Theobald (2010) "Fast determination of the optimal rotational matrix for macromolecular superpositions." J. Comput. Chem. 31, 1561-1563. . A full description of the method, along with the original C implementation can be found at http://theobald.brandeis.edu/qcp/ . Python Port by Joshua L. Adelman Files: package/MDAnalysis/visualization/streamlines*.py Copyright: 2014 Tyler Reddy and Matthieu Chavent License: GPL-3 Files: debian/* Copyright: 2020 Drew Parsons License: GPL-2+ License: GPL-2 This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; version 2 of the License. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . On Debian systems, the complete text of the GNU General Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". License: GPL-2+ This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . On Debian systems, the complete text of the GNU General Public License version 2 can be found in "/usr/share/common-licenses/GPL-2", or version 3 in "/usr/share/common-licenses/GPL-3", License: GPL-3 This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; version 3 of the License. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . On Debian systems, the complete text of the GNU General Public License version 3 can be found in "/usr/share/common-licenses/GPL-3". License: GPL-3+ This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. . This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . 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