Source: mecat2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Shayan Doust <hello@shayandoust.me>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
               zlib1g-dev,
               perl
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/mecat2
Vcs-Git: https://salsa.debian.org/med-team/mecat2.git
Homepage: https://github.com/xiaochuanle/MECAT2
Rules-Requires-Root: no

Package: mecat2
Architecture: any-amd64 x32
Depends: ${shlibs:Depends},
         ${misc:Depends},
         ${perl:Depends}
Description: ultra-fast and accurate de novo assembly tools for SMRT reads
 An improved version of MECAT. It is an ultra-fast and accurate mapping
 and error correcting de novo assembly tools for single molecula
 sequencing (SMRT) reads. MECAT2 consists of the following three modules:
  1. mecat2map: a fast and accurate alignment tool for SMRT reads.
  2. mecat2cns: correct noisy reads based on their pairwise overlaps.
  3. fsa: a string graph based assembly tool.