Source: minexpert2
Section: science
Priority: optional
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Uploaders: Filippo Rusconi <lopippo@debian.org>
Build-Depends: debhelper-compat (= 13),
 dpkg-dev (>= 1.18.25),
 graphicsmagick-imagemagick-compat,
 libgomp1,
 qtbase5-dev (>= 5.11.3),
 libqt5svg5-dev (>= 5.11.3),
 cmake (>= 3.12),
 daps (>= 3.0.0),
 libjeuclid-core-java,
 libjeuclid-fop-java,
 docbook-mathml,
 libjs-jquery,
 libjs-highlight.js,
 libjs-mathjax,
 fonts-mathjax,
 fonts-mathjax-extras,
 texlive-fonts-extra (>= 2020.20210202),
 fonts-ebgaramond-extra,
 libqcustomplot-dev(>= 2.0),
 libisospec++-dev (>=2.1.3),
 libpappsomspp-dev (>= 0.8.15),
 libpappsomspp-widget-dev (>= 0.8.15),
 docbook-to-man,
 qttools5-dev-tools,
 qtchooser
Standards-Version: 4.5.1
Homepage: http://www.msxpertsuite.org/
Vcs-Browser: https://salsa.debian.org/debichem-team/minexpert2
Vcs-Git: https://salsa.debian.org/debichem-team/minexpert2.git


Package: minexpert2
Architecture: any
Depends: ${shlibs:Depends},
 ${misc:Depends}
Suggests: minexpert2-doc (>= ${source:Upstream-Version})
Replaces: msxpertsuite-minexpert (<< 6.0.0)
Breaks: msxpertsuite-minexpert (<< 6.0.0)
Conflicts: msxpertsuite-minexpert
Description: MS^n mass spectrometric data visualization and mining (runtime)
 mineXpert2 allows the user to perform the following tasks:
  - Open mass spectrometry data files (mzML, mzXML, asc, xy, ...);
  - Display in a table view the full data set, for easy filtering;
  - Calculate and display the TIC chromatogram;
  - Calculate and display a mz=f(rt) color map;
  - For mobility data, calculate and display a mz=f(dt) color map;
  - Integrate the mass spectrometric data from any kind of data 
    representation (mass | drift spectra, TIC | XIC chromatogram,
    2D color maps) to any other kind of data representation;
  - For any mass data feature (mass peak, TIC | XIC peak, color map)
    integrate to a XIC single intensity value;
  - Powerful isotopic cluster calculation starting from a 
    chemical formula, optionally with user-defined isotopic abundance ratios;
  - Gaussian fit over any isotopic cluster to estimate the 
    average mass of a given ion;
  - Mouse-driven deconvolution of m/z data (charge envelope-based 
    or isotopic cluster-based);
  - Export the data to text files;
  - Export the graphical representation of mass spectrometric 
    data to graphics files in a number of formats (jpg, png, pdf).
 .
 This package ships the mineXpert2 program.


Package: minexpert2-doc
Section: doc
Architecture: all
Depends: libjs-jquery,
         libjs-highlight.js,
         ${misc:Depends}
Replaces: msxpertsuite-minexpert-data-doc (<< 6.0.0)
Breaks: msxpertsuite-minexpert-data-doc (<< 6.0.0)
Conflicts: msxpertsuite-minexpert-data-doc
Description: MS^n mass spectrometric data visualization and mining (doc)
 mineXpert2 allows the user to perform the following tasks:
  - Open mass spectrometry data files (mzML, mzXML, asc, xy, ...);
  - Display in a table view the full data set, for easy filtering;
  - Calculate and display the TIC chromatogram;
  - Calculate and display a mz=f(rt) color map;
  - For mobility data, calculate and display a mz=f(dt) color map;
  - Integrate the mass spectrometric data from any kind of data 
    representation (mass | drift spectra, TIC | XIC chromatogram,
    2D color maps) to any other kind of data representation;
  - For any mass data feature (mass peak, TIC | XIC peak, color map)
    integrate to a XIC single intensity value;
  - Powerful isotopic cluster calculation starting from a 
    chemical formula, optionally with user-defined isotopic abundance ratios;
  - Gaussian fit over any isotopic cluster to estimate the 
    average mass of a given ion;
  - Mouse-driven deconvolution of m/z data (charge envelope-based 
    or isotopic cluster-based);
  - Export the data to text files;
  - Export the graphical representation of mass spectrometric 
    data to graphics files in a number of formats (jpg, png, pdf).
 .
 This package ships the user manual in both PDF and HTML formats.